BAC Information

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BAC

Clone NameMSMg01-388K07
Chromosome5 (Build37)
Map Location 99,725,819 - 99,726,303
singlet/doubletsinglet
Overlap geneA930011G23Rik
Upstream gene1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b
Downstream geneLOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388K07.T7 (MSMg01no388_k07.b1)MSMg01-388K07.TJ (MSMg01no388_k07.g1)
ACCAG491089AG491090
length752752
length of high quality
(start - end)
457 (42 - 498)475 (78 - 552)
definitionCHROMAT_FILE: MSMg01no388_k07.b1 PHD_FILE: MSMg01no388_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:01 2005CHROMAT_FILE: MSMg01no388_k07.g1 PHD_FILE: MSMg01no388_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAAGATTTCATATTTGCATTTATGAGTAAATTATTTTGAGCACATCAT
CCAAGATATACTATTAATGGTATTTACACATAGCATATATATCATATGTA
TCATATATGTCACATATATCATAGACAATATATCATATAAGATACATGGA
ATAGGAATTTTAAATGCTACACAAAGTTAAATAAATGATTTTTTAAAACC
ATTAATGTAATAAAAGATCTTTTACTTCTACAAAAAATCTATTTTAATGA
AAGAAAAGTGAATGGATATGGAAATCTTGATTTAACAGCTTGCTAATGAT
CTTTGTTGATACTTTGTTAAAGACGAGGTTCAAAATTCTGTTTCTTTGAA
TATATTATTCAAATGGCTATTACAGCTAGAAAAGATAACTTGTCAAGATA
GGCAGATCCCGAGGAAAGAGATGCATCTGTAGCTTTGCTCACTACAACAG
TTCTCCTTTCACTTTCTAGTCCCATTTACTAATTATGCAAATCATCTTTT
ATCACATCGCATTAATAAATTTTCACCTTCCACCATTTGTCAGTCAGTTG
CTCTCATCCCCTATGTGGATGATATCACGTCCATCTCCTTTCACCCAGTA
AGCTCCAAGCTCCACCCCAGATGTCCTTTATTTAGAAGAATCCCAAAAAA
GATGGCCGTGCCCCCCCCGCAGAGCCGACTAAGACACTATTTTTATCCGC
GG
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACATGGGCAAAGTGGCATAGGA
ACTCAGTTTCATAATAGTGACCCACTTCCAAGTGTCTGTTCTCTACTCTG
TAATCTTTCTTTATTTTAATCTTCTTTTTTGTTCAAAGCCCATCAGCACT
GATCCAGTTGCTAACAAATGAGTCAACTCATAGTGTCACCCTGACATGAG
GGACAGAGGCTTGTGGAGGAGGAGGGTTAGACCAGTGTGATGGTGCACAG
CTGTAATCCCAGCACTCTTTATATTCAAGGCTAAAGCTTTAGGCCAGCCT
GGGCTACATGACTTCCAGGCTATCCTGGGCTACATGAAACAGCCATCCCA
AAAATGTAACAAAGACAACCAACAGCACGTAAGGAGGAGGAGGAAGAAGA
GGAGGAGGCAGAGGAGGTAGAAGCAGAAGAGTGGAGCAGTAACTTAAACA
TAGCAACTTTGCAGGCAAAAGCTTTAATCGTTTATCCCGTTTCCTACATG
GGTCACACAAACTAGGCCACATCTAAATCACAGGCTCAGTAGAGTCAGAA
GGGCACCCTGTCAGAGGAGCAACTAAAGGTTCCCAGACCAGTCAAGGCCT
TCCCGTATCATCTCTCCGTTCCCCTTCCATTGGAGCCCTGAACTACTACT
CCGGATTTCTGGCCCTCCCCCTTTCCCAAAAAACGACTCTCCTTGCTAAT
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_k07.g1 MSMg01no388_k07.g1 CHROMAT_FILE:
MSMg01no388_k07.g1 PHD_FILE: MSMg01no388_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:01 2005
         (475 letters)



>mm_chr5_99725619_99726493
          Length = 875

 Score =  768 bits (397), Expect = 0.0
 Identities = 459/489 (93%), Gaps = 18/489 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgggcaaagtggcataggaactcagtttcataatagtgacccacttccaagtgtct 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cacatgggcaaagtggcataggaactcagtttcattatagtgacccacttccaagtgtct 260

                                                                       
Query: 61  gttctctactctgtaatctttctttattttaatcttcttttttgttcaaagcccatcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctctactctgtaatctttctttattttaatcttcttttttgttcaaagcccatcagc 320

                                                                       
Query: 121 actgatccagttgctaacaaatgagtcaactcatagtgtcaccctgacatgagggacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgatccagttgctaacaaatgagtcaactcatagtgtcaccctgacatgagggacaga 380

                                                                       
Query: 181 ggcttgtggaggaggagggttagaccagtgtgatggtgcacagctgtaatcccagcactc 240
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ggcttgtggaggaggaggattagaccagtgtggtggtgcacagctgtaatcccagcactc 440

                                                                       
Query: 241 tttat--attcaaggctaaagctttaggccagcctgggctacatgacttccaggctatcc 298
              |   | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ---aagaagtcgaggctaaagctttaggccagcctgggctacatgacttccaggctatcc 497

                                                                       
Query: 299 tgggctacatgaaacagccatcccaaaaatgtaacaaagacaaccaacagcacgtaagga 358
           |||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||||
Sbjct: 498 tgggctacatgaaacagccatcccaaaaatgtaacaaagagaaagaagagcacgtaagga 557

                                                                       
Query: 359 ggaggaggaaga------------agaggaggaggcagaggaggtagaagcagaagagtg 406
           ||||||||||||            ||||||||||||||||||||| ||||||||||||||
Sbjct: 558 ggaggaggaagaggaggaggaagaagaggaggaggcagaggaggtggaagcagaagagtg 617

                                                                       
Query: 407 gagcagtaacttaaacatagcaactttgcaggcaaaagctttaatcgtttatcccgtttc 466
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 618 gagcagtaactttaacatagcaactttgcaggcaaaagctttaatcgtttatcc-gtttc 676

                    
Query: 467 ctacatggg 475
           |||||||||
Sbjct: 677 ctacatggg 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)