BAC Information

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BAC

Clone NameMSMg01-388M07
Chromosome5 (Build37)
Map Location 78,598,921 - 78,599,221
singlet/doubletsinglet
Overlap geneLOC100039398
Upstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388M07.T7 (MSMg01no388_m07.b1)MSMg01-388M07.TJ (MSMg01no388_m07.g1)
ACCAG491184AG491185
length754743
length of high quality
(start - end)
301 (106 - 406)210 (83 - 292)
definitionCHROMAT_FILE: MSMg01no388_m07.b1 PHD_FILE: MSMg01no388_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:10 2005CHROMAT_FILE: MSMg01no388_m07.g1 PHD_FILE: MSMg01no388_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AGAACTTCGCTGTTGGAAATTTTTATTTTATATGTCTGAGAATTCAGAAC
TTCATGGAGATAATCTGCCATACAGGAATTAAGAATGAGTCACACGAAGT
GAGTGGAATCTTTTGCCTAGAAATTAAATGAGAAACTTTAATATGGCTGG
ACAATGCAGTATTTTCCATATTTTCAATTATGAAAATGAACTCATCTCCA
TGATATTTGTATTTCAGAGTTCAATTCTGGGTTGAGCAAGCAGAGAGAAG
TTTGCATTATGCTTTATTATTGTGAGTTATGCTTCTTCTAGAATAGACTT
GTACTAGCCACAGGTAGATAATAATAAAACTCTAATAATGATGATTTCAA
TTTTCCAAAGCACAGATTGAGTTCATATAACCTCATAAAGAGATGTCCTC
CACCAGCATTATATAGAGGGAGATTAATAAGCACATTTATGGGTACAAGC
ATCATTTCCTGCATTTGTTATGCTCTCATTGAGATTACCGCCAAGGCGGA
ATCCCCGGCACGTGCCCTAATGGCCGATCCTAAACCATACCTCCTATGTC
CTCACTTTACCCCACATTGATTTTTCCCCCCTCTCCTCTCCCCCCCTCTC
TCCCCCTCCCTCCCCCCGCCTCTCTCTCTTCTTCCCCCTTCACCCCCCCC
TTTCCCGTTCTGAGGGTTTACTCCACCCCCCCCCCTCCCTTCTTCCCCAC
CCCT
NCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTT
TTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAAC
GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTAC
ATTGATGGATTTTCGAATATTAAACCATCCCTGCATCCCTGGAATAAAAC
CTACTTGGTCGGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTA
GCGAGAATTTTATTGAGTATTTTTTTATCGATATTCATAAGAGAAATTGG
TCTGAAGTTCTCTATCTTTGCTGCATCTTTCTGAGGTTTAGGTATCATAG
TAATAGTGGCTTCATACCCCCACCCCGGGTAGAGTACCTTCTACTTCTAT
TTTGTGAAATACCTTGTGCAAAACTGCAATTAGATCTTCTTTGAACGTCT
GACACAACTCTGCTCTAGACCCGTTTGGTCCTTGGCCTTTTTTTGCCTGC
CACACTATTCATAACTGCTCTCCATTTCCTTACCCCATATCCCATTGCTT
ATACCGCCCCCCTGATCCTGAACCCCACTTGGGACCCGCCACCGGACGAA
ACTTTTTCCTTTCTCCATCCCTCCCCTCCCGCCCACATACCCTTCTCGCC
CTTACCCCACCCCCTTTCCCCTCCTCTCCCCCCTTGCCTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_m07.b1 MSMg01no388_m07.b1 CHROMAT_FILE:
MSMg01no388_m07.b1 PHD_FILE: MSMg01no388_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:10 2005
         (301 letters)



>mm_chr5_78598721_78599421
          Length = 701

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagataatctgccatacaggaattaagaatgagtcacacgaagtgagtggaatcttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagataatctgccatacaggaattaagaatgagtcacacgaagtgagtggaatcttttg 260

                                                                       
Query: 61  cctagaaattaaatgagaaactttaatatggctggacaatgcagtattttccatattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagaaattaaatgagaaactttaatatggctggacaatgcagtattttccatattttc 320

                                                                       
Query: 121 aattatgaaaatgaactcatctccatgatatttgtatttcagagttcaattctgggttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattatgaaaatgaactcatctccatgatatttgtatttcagagttcaattctgggttga 380

                                                                       
Query: 181 gcaagcagagagaagtttgcattatgctttattattgtgagttatgcttcttctagaata 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaagcagggagaagtttgcattatgctttattattgtgagttatgcttcttctagaata 440

                                                                       
Query: 241 gacttgtactagccacaggtagataataataaaactctaataatgatgatttcaattttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacttgtactagccacaggtagataataataaaactctaataatgatgatttcaattttc 500

            
Query: 301 c 301
           |
Sbjct: 501 c 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)