Query= MSMg01no389_e19.b1 MSMg01no389_e19.b1 CHROMAT_FILE:
MSMg01no389_e19.b1 PHD_FILE: MSMg01no389_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:51 2005
(463 letters)
>mm_chr5_13442626_13443490
Length = 865
Score = 812 bits (420), Expect = 0.0
Identities = 446/460 (96%), Gaps = 10/460 (2%)
Strand = Plus / Plus
Query: 6 gaattctgtcttatagcattgttaggtatgaactcattcttcgtttagcagcttagtcta 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtcttacagcattgttaggtatgaactcattcttcgtttagcagcttagtcta 265
Query: 66 ctaggcactgttcctgtctttctcttcctatatcatatggcctttactcatgtcctgtat 125
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 266 ctaggcactgttcctgtcttactcttcctatatcatatggtctttactcatgtcctgtat 325
Query: 126 ttacagtgtttcattattcctcttctattatggtcctgtttttgaagtcaggtttaattg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttacagtgtttcattattcctcttctattatggtcctgtttttgaagtcaggtttaattg 385
Query: 186 actagcttattttccgaggactatttcttcctttagcattattttctct--gttttattc 243
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 386 actagcttattttccgaggactatttcttcctttagcattattttctctccgttttattc 445
Query: 244 cttaacactcggtatggtattattattattatttattagttagttagttagttagttagt 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttaacactcggtatggtattattattattatttattagttagttagttagttagtt--- 502
Query: 304 tagtttctatgttccccaaagatatcttttttatcaagattctgctgctcagaatagtct 363
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 -----tctatgttcccaaaagatatcttttttatcaagattctgctgctcagaatagtct 557
Query: 364 acatactacttggccaagatgttacatctacaaggaactgtatatattttcactgaatta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acatactacttggccaagatgttacatctacaaggaactgtatatattttcactgaatta 617
Query: 424 tgataatgactattatatagagagaagtgaataattaggt 463
||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgataatgactattatatagagagaagtgaataattaggt 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 865
Length adjustment: 10
Effective length of query: 453
Effective length of database: 855
Effective search space: 387315
Effective search space used: 387315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_e19.g1 MSMg01no389_e19.g1 CHROMAT_FILE:
MSMg01no389_e19.g1 PHD_FILE: MSMg01no389_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:51 2005
(502 letters)
>mm_chr5_13498485_13499385
Length = 901
Score = 828 bits (428), Expect = 0.0
Identities = 479/502 (95%), Gaps = 11/502 (2%)
Strand = Plus / Minus
Query: 1 aggttggttcaaagcagctggcctggctcataattcctctcggaactgactgattccaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aggttggttcaaagcagctggcctggctcataattcctctcggaactgactgattccaac 455
Query: 61 tggcttctctgagcttctgcttgggaaaacttcctctgaattctagaaactgaagtgcac 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 454 tggcttctctgagcttctgcttgggaaaacttcctctgaattccagaaactgaagtgcac 395
Query: 121 taactgcactcgcctgaacgccactgaacgcctgtactcgactgaactatagtcactgca 180
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 394 taactgcactcgcctgaacgccactgaacacctaaactcgactgaactatagtcacttca 335
Query: 181 ctgccccccttcctcagttatgctgcactgcttttaagtatttcctgtctgtgctgatga 240
||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 334 ctg-ccctctttctcagttatgccgcactgcttttaagtatttcctgtctgt-------- 284
Query: 241 aagctgagtgtgtctttaatggcactaaattcaaattcatatatttatgggaatgtgggt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 283 --gctgagtgtgtctttaatggcactaaattcaaattcatatctttatgggaatgtgggt 226
Query: 301 actcactataacaaatatcatttttgaaatgtaatttttacaaacaagtgtaatgaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 225 actcactataacaaatatcatttttgaaatgtaatttttacaaacaaatgtaatgaaatg 166
Query: 361 ttgtaaaagataatgaagactgaagtgactactgactgaaataataatcatatcttatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 165 ttgtaaaagataatgaagactgaagtgactactgactgaaataataatcatctcttatag 106
Query: 421 ctagtttttatttttaatttagtgcataatccatcaaaaatgatcaaactgatgagattc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtagtttttatttttaatttagtgcataatccatcaaaaatgatcaaactgatgagattc 46
Query: 481 agagatcttaccttgctatctc 502
||||||||||||||||||||||
Sbjct: 45 agagatcttaccttgctatctc 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
