Query= MSMg01no389_k12.b1 MSMg01no389_k12.b1 CHROMAT_FILE:
MSMg01no389_k12.b1 PHD_FILE: MSMg01no389_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:20 2005
(229 letters)
>mm_chr5_86372394_86373022
Length = 629
Score = 400 bits (207), Expect = e-116
Identities = 227/241 (94%), Gaps = 12/241 (4%)
Strand = Plus / Plus
Query: 1 atttgaaatgtaaatgaagaaaatgtctaataaaaaattgaaaaaagaattcatggcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgaaatgtaaatgaagaaaatgtctaataaaaaattgaaaaaagaattcatggcatt 260
Query: 61 cttatttgcatgaaaagctcagcatggaacccattgtgcctttttttttcttcttattct 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatttgcatgaaaatctcagcatggaacccattgtgcctttttttttcttcttattct 320
Query: 121 ccaccacatccattcagtaaagagcctacagagctc------------ttgctgactgac 168
|||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 321 ccaccacatccattcagtaaagagcctacagagctccctagcaaactcttgctgacagac 380
Query: 169 ttcctgctcccactctcagtaaattcttgcctgataattcttattctgtttgagaacacg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctgctcccactctcagtaaattcttgcctgataattcttattctgtttgagaacacg 440
Query: 229 g 229
|
Sbjct: 441 g 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no389_k12.g1 MSMg01no389_k12.g1 CHROMAT_FILE:
MSMg01no389_k12.g1 PHD_FILE: MSMg01no389_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:20 2005
(244 letters)
>mm_chr5_86550325_86550968
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 1 caatattgtaagtaattgcgaatcatcattatgagcacttgttacgctgtactgtattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caatattgtaagtaattgcgaatcatcattatgagcacttgttacgctgtactgtattgg 385
Query: 61 tactctaaagttagagtccattatcaatccctgtattgattggttttaggttgctttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tactctaaagttagagtccattatcaatccctgtattgattggttttaggttgctttagt 325
Query: 121 tttgtgttgtgttgtgttatagtttgaaaataggatgaaatggtgaaataattttgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgtgttgtgttgtgttatagtttgaaaataggatgaaatggtgaaataattttgttta 265
Query: 181 ctatatatggaataggctggacatattgaatctattccattttaatttaatttaattcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctatatatggaataggctggacatattgaatctattccattttaatttaatttaattcca 205
Query: 241 atta 244
||||
Sbjct: 204 atta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
