Query= MSMg01no389_l12.b1 MSMg01no389_l12.b1 CHROMAT_FILE:
MSMg01no389_l12.b1 PHD_FILE: MSMg01no389_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:25 2005
(432 letters)
>mm_chr5_48697474_48698305
Length = 832
Score = 764 bits (395), Expect = 0.0
Identities = 418/429 (97%), Gaps = 7/429 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctgtgtctcctagtttaatcaggtatacaaggctggaaatttaaagagcagta 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 ggaattcctgtgtctcctagtttaatcaggtatacaaggctgaaaatttaaagagcagta 263
Query: 64 tctggcagtttataccactgtatttgctggtaatatagacagcagttaagtcacaaattg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctggcagtttataccactgtatttgctggtaatatagacagcagttaagtcacaaattg 323
Query: 124 actctacttggtgattactaagccttgaaaccttattttcagggctattgatcttgaata 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actctacttg------cctaagccttgaaaccttattttcagggctattgatcttgaata 377
Query: 184 tttagataatcttactacagattggactttttgcttctgttttaaaggaaaaaaaaagac 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 378 tttagataatcttactacagattggactttttgcttctgttttaaagg-aaaaaaaagac 436
Query: 244 atcataatggtttttacatgacaaatttttattcttcctgattataaagtcccaaaataa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atcataatggtttttacatgacaaatttttattcttcctgattataaagtcccaaaataa 496
Query: 304 agttctatttctcttgcatttgagcagagttaattttccaggggtcacacttgatttgtc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agttctatttctcttgcatttgagcagagttaattttccaggggtcacacttgatttgtc 556
Query: 364 ttccagtcatgagcttttaatggagaaaaatcccacagtcagataattattagcaaagca 423
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 557 ttccagtcatgagcttttaatggagaaaattcccacagccagataattattagcaaagca 616
Query: 424 cataaatta 432
|||||||||
Sbjct: 617 cataaatta 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_l12.g1 MSMg01no389_l12.g1 CHROMAT_FILE:
MSMg01no389_l12.g1 PHD_FILE: MSMg01no389_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:25 2005
(538 letters)
>mm_chr5_48811328_48812265
Length = 938
Score = 656 bits (339), Expect = 0.0
Identities = 410/451 (90%), Gaps = 33/451 (7%)
Strand = Plus / Minus
Query: 88 aattgcatggtggttaaaaatgtggagaacagccaggcatggtggcacatgcctttgatc 147
||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 938 aattgcatggtggttaaaaatgtggagaa-ggccaggcatagtggcgcatgcctttgatc 880
Query: 148 ccagcactcaggaggcagaggcaggtgaatttctgagttcaaggccagcctggtgtacaa 207
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ccagaactcaggaggcagaggcaggtgaatttctgagttcaaggccagcctggtgtacaa 820
Query: 208 agtgagttccaggacagccaggactatacggaaaaactctgtctcgaaaaaccaaaataa 267
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 819 agtgagttccaggacagccagggctatacggaaaaactctgtctcaaaaaaccaaaataa 760
Query: 268 ataaataaataaacaaacaaacaaacaaataaataaataaataaaaattttaaaaaatgt 327
|||||||||| |||| | | | |||| |||||||
Sbjct: 759 ataaataaat----------------aaat---t---t---t-----tttt--aaaatgt 732
Query: 328 ggagaacagaagtgcatagcagatgcattcatacctaatatctggtctgttaaaacctca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggagaacagaagtgcatagcagatgcattcatacctaatatctggtctgttaaaacctca 672
Query: 388 gcatgctccttcttctcccctaatgaaaaagctggttctagaggaatgtttgttatggag 447
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gcatgccccttcttctcccctaatgaaaaagctggttctagaggaatgtttgttatggag 612
Query: 448 tataaaagcgttatgatgattggagcagaaattagtttagtatatggagctctgagaacc 507
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tataaaagggttatgatgattggagcagaaattagtttagtatatggagctctgagaacc 552
Query: 508 atctgagaaggactaatagatctcctagagt 538
|||||||||||||||||||||||||||||||
Sbjct: 551 atctgagaaggactaatagatctcctagagt 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
