Query= MSMg01no390_e19.b1 MSMg01no390_e19.b1 CHROMAT_FILE:
MSMg01no390_e19.b1 PHD_FILE: MSMg01no390_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:10 2005
(561 letters)
>mm_chr5_87930714_87931674
Length = 961
Score = 1071 bits (554), Expect = 0.0
Identities = 559/561 (99%)
Strand = Plus / Plus
Query: 1 catgcagtgcattttgatatttatccacattactccactatcccttcctaggtctgccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcagtgcattttgatatttatccacattactccactatcccttcctaggtctgccac 260
Query: 61 cacttcccaccttccacactttgcatccttgttaaaaaagtagaacagcctttgagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttcccaccttccacactttgcatccttgttaaaaaagtagaacagcctttgagttca 320
Query: 121 cttggtgctgaccctgatctgtcaggtatagagtcactcaatgaagcatgaccagccccc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cttggtgctgaccctgatctgtcaggtatagagtcgctcaatgaagcatgaccagccccc 380
Query: 181 aaagcccacacttgccagctctcaatagtagccccacagctggagatgggacgtttttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcccacacttgccagctctcaatagtagccccacagctggagatgggacgtttttat 440
Query: 241 cctctcaactccatgctaagattttgtctgattttgtcttgcacagtcctgtacatgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctcaactccatgctaagattttgtctgattttgtcttgcacagtcctgtacatgctt 500
Query: 301 gtatagctattatgaattcatgtatttaacagccctattgtttgtagaaaactcttttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatagctattatgaattcatgtatttaacagccctattgtttgtagaaaactcttttgt 560
Query: 361 tgtagtcaagatatcctacagttttcacctaagtattttacaatattcccagagatatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtagtcaagatatcctacagttttcacctaagtattttacaatattcccagagatatgg 620
Query: 421 gagaaaggggtgagacactttgtgaattcagtcaaataaaacccttattgataatttaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaaaggggtgagacactttgtgaattcagtcaaataaaacccttattgataatttaac 680
Query: 481 ttaagctattacattaagcttaacatttcagaatttataanaattgtgttcaatttttaa 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ttaagctattacattaagcttaacatttcagaatttataaaaattgtgttcaatttttaa 740
Query: 541 aggaaattattttttctgaaa 561
|||||||||||||||||||||
Sbjct: 741 aggaaattattttttctgaaa 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_e19.g1 MSMg01no390_e19.g1 CHROMAT_FILE:
MSMg01no390_e19.g1 PHD_FILE: MSMg01no390_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:10 2005
(595 letters)
>mm_chr5_88105487_88106481
Length = 995
Score = 1108 bits (573), Expect = 0.0
Identities = 590/597 (98%), Gaps = 4/597 (0%)
Strand = Plus / Minus
Query: 1 tttagtatattgattgtcatagaatatgcattggcataataggtgagaaatattaaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tttagtatattgattgtcatagaatatgcattggcataataggtgagaaatattaaaata 577
Query: 61 ggtttagtaaaaagaaaaaaaaaacttacctgtgccaggaaagcttgctaaagaagaaaa 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggtttagtaaaaag--aaaaaaaacttacctgtgccaggaaagcttgctaaagaagaaaa 519
Query: 121 ataaaacttctttagtatatttattgacatagagtatgtattggcatagtgtttgagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ataaaacttctttagtatatttattgacatagagtatgtattggcatagtgtttgagaaa 459
Query: 181 tgtttaaaaagtttggtaaaaaataaaattttacctgtaccagggaagattgctaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgtttaaaaagtttggtaaaaaataaaattttacctgtaccagggaagattgctaaagaa 399
Query: 241 aaaacataatctttctttagtatattgattggcatagactctctactagcatagcatttg 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaaacataagcattctttagtatattgattggcatagactctctactagcatagcatttg 339
Query: 301 agagaaattaaaataatttagatttaatcaaaa--agtcttacctgtgctggggaaactt 358
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 338 agagaaattaaaataatttagatttaatcaaaaagagtcttacctgtgctggggaaactt 279
Query: 359 gctataaaagaaaaataagctgcctttagtacttcagtatattgactggcatgaatttgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gctataaaagaaaaataagctgcctttagtacttcagtatattgactggcatgaatttgc 219
Query: 419 attggtatcatatttgagataaattaaaataatttagatttagttaaaaatatcttacca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 attggtatcatatttgagataaattaaaataatttagatttagttaaaaatatcttacca 159
Query: 479 gtgccagggaaggttgctaagaaagaaaaaataagtctccttttagtatattgattgaca 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gtgccagggaaggttgctaaaaaagaaaaaataagtctccttttagtatattgattgaca 99
Query: 539 tagactatgtatttgagataaattaaaataattttgatctagtaaaatattttacct 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 tagactatgtatttgagataaattaaaataattttgatctagtaaaatattttacct 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
