BAC Information

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BAC

Clone NameMSMg01-390L05
Chromosome5 (Build37)
Map Location 101,085,911 - 101,086,400
singlet/doubletsinglet
Overlap geneCoq2
Upstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8
Downstream geneHpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390L05.T7 (MSMg01no390_l05.b1)MSMg01-390L05.TJ (MSMg01no390_l05.g1)
ACCAG492650AG492651
length675758
length of high quality
(start - end)		79 (64 - 142)490 (78 - 567)
definitionCHROMAT_FILE: MSMg01no390_l05.b1 PHD_FILE: MSMg01no390_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:42 2005CHROMAT_FILE: MSMg01no390_l05.g1 PHD_FILE: MSMg01no390_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCCCCCCCCCCTTAATTTGGGCGCTATAGACTCATATATTAGAGG
ACCGCGGAATTCATTTTTATTTATGTTATTTCCTTGAGGGCGCGAGTGTT
AGGTCTTTGTTGATTCCATCTTATGGAAATCTGACCTTTAAGACTTCCTC
CTCCCAGTTCTAAAGTATGGATGGTGGCCCGGGAGGGAGCCCTGGGGGGT
TTTTGGCGGTTAAAAACATTTTAACCTTTTGGGTTGGTTGGGGGGTTTTG
AAAACCAAAATTTTTTGGGTACCCCCCGCGCTTAGATTTCCCACCCCTTA
TTTCCCCCCCCGGAGGGGGCCTCTTAAAACTTCTTTTTTCTAAAAAAGGG
GGGGCCCCCCCACGGCCCCCCCCCAAAAAATTTTTGTTTTTTAAAAAAAA
AAAAGGGGCCCCCCCCCCCCCCCAACCATTTTTTTCCTCTATCATATTCT
TTTTCTTTATTCCACTTCTCCTCGTTCATCTTCCCCAAAAAACAAACAAT
CTTCCTTTCCTTCTTTCTTTTCACAATCCTCTTGCCCGTCTCCTCCTCTC
CCTCCCTCCTTTTTCCTACTCCCCCCCCCCCCTTCCCCCCCTCTATTCTC
CCCGCTTCCCTCTCTCCTCTCTCCCCTTTCCTAACTCCCTTTCCTTTTAC
TCTTCCCCCCCTTTCTTTTTTTCCC

NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGTTCAAAAACAATCCGATA
AACCTATAATAATTAATAATAATAATAATAAGGCCAGACAGATGAAGGTG
TTTGCCACCAAGTCTGATGGCCCGAGTTTGATCCCTAGGACCTTCTCTTG
TGTTGACCTCTGACAAGTGCACATGAGTGTCCCTTGTGTGGGGACCACTG
CCAGCCAGAGAAAACATAGCCCTGGAAACCTGCAGCCCCAGCAGCTCAAA
AAGCAAGTCAGCTGAGGCACCTTAGTGAAACCTGCTCTCAAAAGGAAAGC
CGAGGGGTCAGTGTTAAGGAGTTAGGGGGCTTGCCTAGCATGGGGGCAGC
CCAGGGTTCAAGGAAAACAAAACTGTCCTCAGGATGTTCACCCAGGCTTC
TAGGGAGCCTGCATAGAGAGCCTATGAAACAGTGAGCCAGATCTAAGGTG
AGCGGCACCAGTGTTGTCGAGCTTTCTTTGACTAGAATAAGGAGGCACTC
ACGAGCCCGATGATGTGTTTACAGCTTCCGTGCAGGCAAGACTGCAATGA
CACCGACCACAGAAACTTAGTCGATACCCCGGCCGCCTGGTCCATGGCCT
CGCTTCAAAACTGGGAATCTTCAGCGTTTTCCCCTCTAAACAAACCCACC
CCTTGTGTGAAGCTTAAATCCGGACTTACAAGACCTATATTCTGAATTTA
TTGTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_l05.g1 MSMg01no390_l05.g1 CHROMAT_FILE:
MSMg01no390_l05.g1 PHD_FILE: MSMg01no390_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:42 2005
         (490 letters)



>mm_chr5_101085657_101086546
          Length = 890

 Score =  855 bits (442), Expect = 0.0
 Identities = 478/490 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagttcaaaaacaatccgataaacctataataattaataataataataataaggccag 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attagttcaaaaacaatctgataaacctataataattaataataataataataaggccag 685

                                                                       
Query: 61  acagatgaaggtgtttgccaccaagtctgatggcccgagtttgatccctaggaccttctc 120
           ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 684 acagatgaaggtgcttgccaccaagtctgatggcctgagtttgatccccaggaccttctc 625

                                                                       
Query: 121 ttgtgttgacctctgacaagtgcacatgagtgtcccttgtgtggggaccactgccagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgtgttgacctctgacaagtgcacatgagtgtcccttgtgtggggaccactgccagcca 565

                                                                       
Query: 181 gagaaaacatagccctggaaacctgcagccccagcagctcaaaaagcaagtcagctgagg 240
           ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||
Sbjct: 564 gagaaaacacagccctggaaacctgcagccccaacagctcaaaaagcaagccagccgagg 505

                                                                       
Query: 241 caccttagtgaaacctgctctcaaaaggaaagccgaggggtcagtgttaaggagttaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 504 caccttagtgaaacctgctctcaaaaggaaagccgaggggtcagtgttaaggagttaggc 445

                                                                       
Query: 301 ggcttgcctagcatgggggcagcccagggttcaaggaaaacaaaactgtcctcaggatgt 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcttgcctagcatgggggcagcccagggttcaaggaaaacaaaactgtcctcaggatgt 385

                                                                       
Query: 361 tcacccaggcttctagggagcctgcatagagagcctatgaaacagtgagccagatctaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcacccaggcttctagggagcctgcatagagagcctatgaaacagtgagccagatctaag 325

                                                                       
Query: 421 gtgagcggcaccagtgttgtcgagctttctttgactagaataaggaggcactcacgagcc 480
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 gtgagctgcaccagtgttgtcgagctttctttgactagagtaaggaggcactcacgagcc 265

                     
Query: 481 cgatgatgtg 490
           ||||||||||
Sbjct: 264 cgatgatgtg 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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