BAC Information

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BAC

Clone NameMSMg01-391I22
Chromosome5 (Build37)
Map Location 115,646,627 - 115,646,969
singlet/doubletsinglet
Overlap genenone
Upstream geneAcacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1
Downstream genePop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391I22.T7 (MSMg01no391_i22.b1)MSMg01-391I22.TJ (MSMg01no391_i22.g1)
ACCAG493301AG493302
length766784
length of high quality
(start - end)
430 (42 - 471)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no391_i22.b1 PHD_FILE: MSMg01no391_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:49 2005CHROMAT_FILE: MSMg01no391_i22.g1 PHD_FILE: MSMg01no391_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAACGACTACTATAGGTCGAGGATCCGCGGAATTCTCTCTA
TAGTCTAGGCTGGCCTAGAACCCCCAGAGATCCACTTGCCTCTGCCTCCT
GAGTGCTGGGATTAGAGGCATGCACCACCAGACACCTTTAAGCTTTCTGA
TCTTAACCACTCACTGATCTCTTCAGCCCCCAGGATTATAATGAAGATTG
GCTGCAGAACTCAGTCTTGGCTGGGTCCAGTGGTGTTCATTCAGAGTCCC
AGTTAGTCAGGAAGCTGAGGCAGGAAAGACCAGCTTGAGAAAACATGAGA
TCCTATTTGTAAAAAGACAGACAGACAGACAGACAGACAGACAGACAGAC
AGACAGACAGACAAGAAACACCAAGTGCAATTCCAGCACTTGAGAGATGG
AGGCAGGAATTTCAGGAGCAGAAGGTTATTTTCTGTGACACACAGCAAAC
TCAAGGCCAGTCTGGGATACCTAAGACCCTGCTTTAGAAAGAAAGAAAGA
GCCAGGCAGTAGTGTTGCACGCCTTTAATCCCGCACTTGGGGAGGNGAAG
NAGTTNATTTTCTAATCCCCAGCCGTCCGCCTCCCCTGAGCCTCTCCTTA
TATCTTTGCTCCCCCCACCAACCCCTTTTTCAATTCCCCCCCCCCCCCTA
TAAAAATACCCCCCCAACCCTTCCCCAACCTCAATCCACACTACCTCATT
AACCCTCCCCTTCATCCCCTCCCCCCCCCCTCATCCCTTACACCCCCTCC
CCCCCCTCCTCCCCTC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCATTTGTAACTTTTGTATC
CAATACATATGCATGCCACCAGGTGTTGTGCCTTGCATCTGCTGTACAAA
GATGTGCCCATTCATTCAATAAATAGTTGTTTGTTCGTTAAGCTGTGCAA
GGGTTTGAACTTGGGCCTAGCATATTCTGGGCAACCACTCTGCCAGTGCA
CTATTCCCCAGACCAGACAGTGCCACTGGGCAGCTATTAGAGGAGTTATC
TCTGCATATGAAGCAAAAGAATTAGTCTTGTCTCCATCTGGGAAAAGATG
GATCTGACAGAGCATAGAGATTCAAATATCTGGAGGAGAAGAGAGCTTGC
TGTGTTCAAGAGGCCACCACACAAGGAGGGCTACGGCGAGCTTGAAGGTG
GCGGAAGGTAAGGCAGGCCACAGATACTTACAGACCTTGCACCCTGTCAT
TGTTTATAACCATACTGCCTCTTTTCGTTGGTCCCCAGCCCGCACATATT
CCCACCCTCCTCCCACCTTGCTGCCCCTAACCTCACCCCCTTATTTTTTT
CCCTTCCCCCTTTCCCTTCTCTCTTCTCCCTTTTCCCTTTCCCCTATCTT
TCTCCCCCCTCCCCTTTTTTTCTTTTTCCTTCCCCCCCCCCCCTCCTTTT
TTTTCCCCCCCCTCCTCTTTTTTCCTCCCCCTCCCCTTCTCCCCCTCTTT
TTTTCTCCTCTCCCTTTCACCCTTTTTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_i22.g1 MSMg01no391_i22.g1 CHROMAT_FILE:
MSMg01no391_i22.g1 PHD_FILE: MSMg01no391_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:49 2005
         (346 letters)



>mm_chr5_115646427_115647172
          Length = 746

 Score =  603 bits (312), Expect = e-177
 Identities = 336/344 (97%), Gaps = 2/344 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttcatttgtaacttttgtatccaatacatatgcatgccaccaggtgttgtgccttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttcatttgtaacttttgtatccaatacatatgcatgccaccaggtgttgtgccttgc 260

                                                                       
Query: 61  atctgctgtacaaagatgtgcccattcattcaataaatagttgtttgttcgttaagctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgctgtacaaagatgtgcccattcattcaataaatagttgtttgttcgttaagctgt 320

                                                                       
Query: 121 gcaagggtttgaacttgggcctagcatattctgggcaaccactctgccagtgcactattc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gcaagggtttgaacttgggcctagcatattctgggcaaccactctgccagtgcactatgc 380

                                                                       
Query: 181 cccagaccagacagtgccactgggcagctattagaggagttatctctgcatatgaagcaa 240
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 381 cccagaccagacagtgccactgggcagctattagaggaattatctttgcatatgaagcaa 440

                                                                       
Query: 241 aagaattagtct-tgtctccatctgggaaaagatggatctgacagagcatagagattcaa 299
           |||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aagaatgagt-tatgtctccatctgggaaaagatggatctgacagagcagagagattcaa 499

                                                       
Query: 300 atatctggaggagaagagagcttgctgtgttcaagaggccacca 343
           |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatctagaggagaagagagcttgctgtgttcaagaggccacca 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)