BAC Information

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BAC

Clone NameMSMg01-392C02
Chromosome5 (Build37)
Map Location 55,790,718 - 55,790,971
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392C02.T7 (MSMg01no392_c02.b1)MSMg01-392C02.TJ (MSMg01no392_c02.g1)
ACCAG493738AG493739
length823803
length of high quality
(start - end)
268 (48 - 315)136 (71 - 206)
definitionCHROMAT_FILE: MSMg01no392_c02.b1 PHD_FILE: MSMg01no392_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:33 2005CHROMAT_FILE: MSMg01no392_c02.g1 PHD_FILE: MSMg01no392_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTAGTATTATGAGTAGCTGGTATTGGACTGTGGATAGTTGTG
CGCTGTCCATGTCTCCTTCAGTGTGCCACTTCCCCATAGAGACTCTGGTG
CTCACTTACAATAAAAGAAACACTTTCCCCCAAACTGTCTCTGGAGTGGT
TTATCTCTGGCCCCTTACTGACCACCTGCATTACTGCCTTTCATGGGACA
CTTTAATAACAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGAAGGTATTTTTTTTTTCCCACCCACCACCACACTCACCC
CCTCTTCTTTTCCCCCCCCTCCACCCCACGGGCCAGCCCCCCCCCCACCT
TCCTATCATATCTTACCCCCCTCCCTCCCCCATTTACTACCTTCTTACCC
CCCTATTCGCCACCCCCCTCCCCACTTTCCCCCCCCCCCCATTTCCTTCT
TGCTCCTCCCCGTCCCTTCTTTCCCCCCCCTCCTTATTCCATCCACCACC
CCATATCTCTCTCTCACTCCTCCCCCTTCCCCCCCCCTATTCCCCCCATT
ACCCCCCCCCCTTCCTCATCCTCCCCCCCCCTTTTCCATATTTCCCACCC
CACCACCCCCTTACCTCCCCTCCCCCTCCTATTCTCGCCCCCTGTTTCCT
ACCTCCGCCCTAATATCTCCCCCCATAACACCCCTTCATCCACCCTTTGC
CCCTTCTTTTTTCTCCCCCCCTCATCCCTCCCATATCATATCCACATCCA
CCACCCCTTCCTCCTCCCTTCCN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAAAGTTGGAATCTCGAATGGCTGAGAAA
CATCTAAAGAAATGTTCAAAGTCCTTAGTGATCATAGAAATGTAAATCAA
AACGACCCTGATATTCCAACTTACACCAGTCAGAATGGCTAAGATCAAAA
CCTCAGGTGACAACACATGTTGCGAGAAGATGTGGAGAAAGAGAAACACT
TCTCCACTGCTGGTGGGATTGAAAACTTGTACAACCACTCTGGAAATCAA
TCTGGAGCTTCCTCATATTATTGGAAATACATCTACCTGAAGATCCAGCT
ATACTCCTCTTGGCTATATGCCCAAAAGATGTCCCACCATGCCTAAGGGT
CACATGTTCCACTATGTTCATAACGGCCTTATCTGCGATAGCCATAACCT
GTACCCTACATACATGTCCTCCGTTTTTACAAATGACAATTCGACCCGTT
TTCCCTCTTCCCCCCTCGCTATCCCCTTCTTTTTTCCCTATTTTTCCACC
CCCCTTCGCTTCTGTCCTCTTTTTGTCATTTCCCTCTACATCTTTCTTTC
CCTTCTTCTTTTTTTTTTCCCTCTTTCTACCCTCTCTCTCCGCTTTTTTT
CTCTCCCTCCCCACCCCTCACTCTTTCCTCTTTTTTCCTTCCCCTATTTT
TCTTACCTTCCCCCCCCCCCATACTAATTTTTTCATCCTCCATTTTCCAT
TTTCCCCCTCTTCTCTCCCCCCCTTTCTACCTCCCTTCTTTTATTTCCCT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_c02.b1 MSMg01no392_c02.b1 CHROMAT_FILE:
MSMg01no392_c02.b1 PHD_FILE: MSMg01no392_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:33 2005
         (268 letters)



>mm_chr5_55790514_55791181
          Length = 668

 Score =  395 bits (204), Expect = e-114
 Identities = 240/254 (94%), Gaps = 4/254 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtagtattatgagtagctggtattggactgtggatagttgtgcgctgtccatg 64
           ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 205 gaattcagtagtaatatgagtagctggtactggactgtggataggtgtgcgctgtccatg 264

                                                                       
Query: 65  tctccttcagtgtgccacttccccatagagactctggtgctcacttacaataaaagaaac 124
           ||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 265 tctccttcaatgtgccacttccccttatagtctctggtgctcacttacaataaaagaaac 324

                                                                       
Query: 125 actttcccccaaactgtctctggagtggtttatctctggccccttactgaccacctgcat 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actttccccaaaactgtctctggagtggtttatctctggccccttactgaccacctgcat 384

                                                                       
Query: 185 tactgcctttcatgggacactttaataacaaaag----tgtgtgtgtgtgtgtgtgtgtg 240
           ||||||||||||||||||||||| ||||||||||    ||||||||||||||||||| ||
Sbjct: 385 tactgcctttcatgggacactttgataacaaaagcaagtgtgtgtgtgtgtgtgtgtatg 444

                         
Query: 241 tgtgtgtgtgtgtg 254
           ||||||||||||||
Sbjct: 445 tgtgtgtgtgtgtg 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)