Query= MSMg01no392_d21.b1 MSMg01no392_d21.b1 CHROMAT_FILE:
MSMg01no392_d21.b1 PHD_FILE: MSMg01no392_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:42 2005
(442 letters)
>mm_chr5_88323575_88324415
Length = 841
Score = 754 bits (390), Expect = 0.0
Identities = 427/440 (97%), Gaps = 5/440 (1%)
Strand = Plus / Minus
Query: 5 gaattccgttccttaattgtatgaactcagggaaaattgggcaaaataaaatggaaggtg 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaattccattccttaattgtatgaactcagggaaaattgggcaaaataaaatggaaggtg 582
Query: 65 caatagatgactactgggttgctttcctcagagcaagtagtagactccagagttataatg 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 581 caatagatgactactgggttgctttcctcagagcaagtaatagactccagagttataatg 522
Query: 125 ctattcagtgtggaaacagctaagaat-ctacaaaatatgatcaactgtagaacctagaa 183
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 521 ctattcagtgtggaaacagctaag-atactacaaaatatgatcaactgtagaacctagaa 463
Query: 184 ctccaaatttaaacaatgtaatatgtattaatatataaactcattcatcttttcttcaat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 462 ctccaaatttaaacaatgtaatatgtattaatatataaactcattcatcttttctttaat 403
Query: 244 gcatgtggattcatatgcatctaccaacaaatacattagtcattattaaatgccaaattt 303
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 402 gtatgtggattcatatgcatctaccaacaaatacattagtcattattaaataccaaattt 343
Query: 304 cctatttttggataatttctgctgaaggcctggtgttgagaaaagaagttgaaaataatt 363
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 342 cctatttttggataatttttgctgaaggcctgttgttgagaaaagaagttgaaaataatt 283
Query: 364 ttaggttcatgtacaaaggagagaaaagtaagtcttgtgtacttctgtgttg-ttgtttt 422
|||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 282 ttaggttcatgtacaaag--gagaaaagtaagtcttgtgtacttctgtgttgtttttttt 225
Query: 423 ttttttaaagaagggctttc 442
||||||||||||||||||||
Sbjct: 224 ttttttaaagaagggctttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 841
Length adjustment: 9
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_d21.g1 MSMg01no392_d21.g1 CHROMAT_FILE:
MSMg01no392_d21.g1 PHD_FILE: MSMg01no392_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:42 2005
(363 letters)
>mm_chr5_88159260_88160021
Length = 762
Score = 656 bits (339), Expect = 0.0
Identities = 357/363 (98%), Gaps = 1/363 (0%)
Strand = Plus / Plus
Query: 1 actgtaattgtaataggatgtacaagttctttgggagctcagacatatatactatacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtaattgtaataggatgtacaagttctttgggagctcagacatatatactatacact 260
Query: 61 gtaaatgcgtggctatatttagaaacttttctttagaggcttcaagttctcatgtacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaatgcgtggctatatttagaaacttttctttagaggcttcaagttctcatgtacatt 320
Query: 121 aacaaagtattactttagatttttaaggtaaacaatagcaaaaatagcaaaacaatttct 180
||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct: 321 aacaaagtattactttagatttttaaggtaaacaatagc-aaaatagcaaaaaaaattct 379
Query: 181 tactgtttccttgacaattataagaaatattcaatgtttttggaattgaatattaggtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tactgtttccttgacaattataagaaatattcaatgtttttggaattgaatattaggtac 439
Query: 241 tcattcctagccttggatcaattgtatagcccaggacataactgacaaatgtgggaatat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 tcattcctagccttggatcaattgtatagcccaggacataactgacaaatgtgggagtat 499
Query: 301 gggtgccacacgattgcttgtgtaaaatacagattcttactccacctctttaaagttgct 360
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 gggtgccacatgattgcttgtgtaaaatacagattcttactccacctctttaaagttgat 559
Query: 361 aaa 363
|||
Sbjct: 560 aaa 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 762
Length adjustment: 9
Effective length of query: 354
Effective length of database: 753
Effective search space: 266562
Effective search space used: 266562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
