BAC Information

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BAC

Clone NameMSMg01-393K17
Chromosome5 (Build37)
Map Location 122,803,190 - 122,803,713
singlet/doubletsinglet
Overlap geneRad9b
Upstream geneAU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7
Downstream geneVps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393K17.T7 (MSMg01no393_k17.b1)MSMg01-393K17.TJ (MSMg01no393_k17.g1)
ACCAG494909AG494910
length7521,312
length of high quality
(start - end)		524 (57 - 580)---
definitionCHROMAT_FILE: MSMg01no393_k17.b1 PHD_FILE: MSMg01no393_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:42 2005CHROMAT_FILE: MSMg01no393_k17.g1 PHD_FILE: MSMg01no393_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCA
CACGGTGTCCTAATTGTATGCGATGCCACAGAGCTGGAAACAGTGGTTTG
AAATCCTTTTTTCCTGAATATGTCCGAACAATTTCCCGTTAAGTGATTAC
ACTGAACTTTTTGGTCAAGATACACCTGGGAGTTAAACTACTCAGCCGAT
CCACACAGCGTTTTATAGACTAATTTACATTAGGAAATGCCGTATACCCT
TACCTACATACACAGTAAGACTTCAATAAATATGCATCGACATAAAATTC
AACATTATTTCTCCTGCAAGCCAATTTCCGTGCTAATGCTCTCATTCATT
TTGAGTTCTCCCAACCTCTGAAGGGGGATGGTACACTGGCCCTTCTTTGG
TCTGTCTACACACAAACCCGGTCCCCAGCTCAAGCATCCCACCCCCCTTA
TAAGGCTATGTATAATACAGTTCTCCACACAGTCTTTCTAATTTCTGATC
TCACTACATGGACTTTTTATTTAGCCCATGCTTCTAACAACCTCTATCAA
CGAAGGGGCTAATATTAGTCTCATTTTTCGACTGAGGGACAGAGAGGATT
GTTCGAGATTATATTATTAAAACCAAAATCAAACCCCCCACCATTAAAAA
AATGTCTTCGGCAGAATGTCGAATAAAGCACCAGGCTGGTTTTCCCCCAG
CCCCAAAAAACTTTTTGTTGGGCCAGCATTATTTCCCCCCCTGTGATTCT
CC

TATGCGCTCGCCTGGCGNGCTTCTCTNATTATGTACTATTGATTGTCTGT
GCGTAGTAGACGTCGCGAGAGCGACTCATGTGTGCATACTTTCTCTCGAT
CTTCGCAACACGGAGGAGAATAACTNTGAAAGACCAGAGAACTAACTCCA
TTTCTTGCTATGATATGAACACTTAATGACACTACTTACATGTGTGAACT
TACCTGCTGTTGTGTGTGATATGAGATAGACATATAGTGTTTCGTACACA
TAGATTTTCGTGCGTGCGATGTGGTGTAAGATGATGTCTGTATTATATAG
TCTCATCGTATCGTCCTTACGTTTTCCGCCTTGGCTCGCGTTCTACAGTA
ACTAGACGAGTCGAGTATGTATGACGATTATGAGTACACGAGTCGACTGA
GAACATGAGACACTGCAAGCTCGATCGTAGATGCGTGTGTTATAGACTCA
TGTGATCAACTATTTCACGATATCTGCGTGTGAGTGTCGAGCAGACAGAG
CGATGCTGTAGACTGGAGCGGCACAACTACGATGGTTGATTCGTCGAGCG
CATATCGTAATAGTGAGTGAGTGTATCCTTGCGAATCTCGATGATGTCAT
ACAGCATTGCATACAGCTACGCTATAGTACAACGCGGCTATGGCAGTGGT
AGACATCGTATGTAGACGTACATGACTCGATATGGAATACTGTTGAGTAT
ACATATAAGGGTCATCGCCGTGTGTGATACACGCTACCGTGACGCCTGAG
CTATGTAGAGCATGGTTTGTTCTAACAACACCTACATTTCTGTCTTGTAC
GTCACACCTGTACTGATATCGCGTGGTCATGTGTGAACTNCGAGNAGTCA
CATATCAACGTGTGTCGGAGCGCAGCACACCGCCGAGTGTATATAGATGC
TGGAGTAACTGATAGAGGCGGACGACACTAGATGCNGAGAAGAGAGAGAG
TGTACGGGACGANGAGTACGAGATAGAGGATAAGTCATAATCCGAGAGCG
GTGAAGCGATGCCGTTCATGTGCGATGAGGAGGTATGNTCTCGCACGCAG
GTTGATGAAATAGNAAGTATCGATGTCGACGCATGAATGAAGTGATACAC
GTAGTGTGCTCTACATACACATGTCGTAGAGATGACTNACTATTGGACTN
ATGACAACGACGAGCGCANATCGACTNCATCTCGCATAAGACANACTACG
ATCCGCGNCATCGTNGTACAGCTGCACGTGACTACGACGCGCAGGCCGCG
CGAGACAGCAACGGCGAGAGTGNAGANTGTGCGTNGGCACACNCTACAGG
CCGATATCGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_k17.b1 MSMg01no393_k17.b1 CHROMAT_FILE:
MSMg01no393_k17.b1 PHD_FILE: MSMg01no393_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:42 2005
         (524 letters)



>mm_chr5_122802990_122803913
          Length = 924

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcctaattgtatgcgatgccacagagctggaaacagtggtttgaaatccttttttcctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcctaattgtatgtgatgccacagagctggaaacagtggtttgaaatccttttttcctg 260

                                                                       
Query: 61  aatatgtccgaacaatttcccgttaagtgattacactgaactttttggtcaagatacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgtccgaacaatttcccgttaagtgattacactgaactttttggtcaagatacacc 320

                                                                       
Query: 121 tgggagttaaactactcagccgatccacacagcgttttatagactaatttacattaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggagttaaactactcagccgatccacacagcgttttatagactaatttacattaggaa 380

                                                                       
Query: 181 atgccgtatacccttacctacatacacagtaagacttcaataaatatgcatcgacataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccgtatacccttacctacatacacagtaagacttcaataaatatgcatcgacataaa 440

                                                                       
Query: 241 attcaacattatttctcctgcaagccaatttccgtgctaatgctctcattcattttgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcaacattatttctcctgcaagccaatttccgtgctaatgctctcattcattttgagt 500

                                                                       
Query: 301 tctcccaacctctgaagggggatggtacactggcccttctttggtctgtctacacacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcccaacctctgaagggggatggtacactggcccttctttggtctgtctacacacaaa 560

                                                                       
Query: 361 cccggtccccagctcaagcatcccaccccccttataaggctatgtataatacagttctcc 420
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 cccggtccccagcccaagcatcccaccccccttataaggctatgtattatacagttctcc 620

                                                                       
Query: 421 acacagtctttctaatttctgatctcactacatggactttttatttagcccatgcttcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacagtctttctaatttctgatctcactacatggactttttatttagcccatgcttcta 680

                                                       
Query: 481 acaacctctatcaacgaaggggctaatattagtctcatttttcg 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaacctctatcaacgaaggggctaatattagtctcatttttcg 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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