XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAA
AGATGAAACACAAATAGCTGAGAAGCACTTCTAGAAATGTGTTACAGCAT
TAGTCATCAGGGAAATGCAAATCAATTCGACTCTGAAATTTATACAAGTC
AGAATCACAAAGATCAGTAAAACAAATGACAACTCATGTTGTCCAGGATC
TGGAAAGGAGGATACTTAGTCATTTCTGAACTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTTTCCTCCTCCTCC
TCCTCCTCTTCCTCCTCCTCCCTCTCTTCCTCCTCCTTCATCTTTCTACC
TTTCATGATGCAATCTCTTCAAGTCTGACAAAAGTGGAAGATAAGAAAGT
AAGGAATTATTTGGATTCAGCAAATACTGCTAAATATATGTTTTAATATT
TTAGCACAGATTATCTTAGTAGATAGCTCTTCATTTACTCTTTCTGGGAT
CTTATGTAGATTTTTTTGAATATTTTTTTAAATCCACTTATATTAACTGA
ATCAGTCTCATTAAATTTGAGTTATTTGAGCTTATTCAAACGCGTTTATA
AGAAAGGGCACTCTTGGTACAATTCCTTGTGTCTGAACCTTGCTGGAATT
TCTGACTTATTCCCAACCCCCAATGGGTTTGGGACACTAATTATATTTCA
TGGGTTTTTTCCCACTGGAACCTCCCAATGATATCTTCTTTTCTCTCTAT
TGAAAATTGTTGCTTTCTTTTTCACCCTCTCTCTTTTA

NCCGAGCGCGTGCAAGAAGGAGGGATATCGGATCTNTNCAGTAATCGCTC
TCCTTAAAACATGTAAAAAANACAAATGTCACCAATGATATTCATACTAC
ATTATTTGCACATTTTACCAATTCTAAAANTTAAACCTTACAAAAAGTTA
AACTGCGGAAAATTTTTNNGGACAACTTTTAAAACCAAAAAAATTTNNAA
AATTTTTACTTTTNAAATTNAAAAAAAAAAATTCTTTTTTNTTTAAAAAA
AAAAAAATTTTTTGTNNNAAAAAAAATCCCCAAAAAGCCCCCCCCCCNNN
NNNNNTTTTTTCNNNNNNAANNNNTNNNAAAAAANNNTAAAANNNNATNN
NNNTNNNNNNANNNNNNNNNNAAAAAAANNNNNNNNTTNTCTNNNNNNNT
TTTTTTCTNNNNNNNNNNNNNNNCCNNCCCCNNNNNNNNNNCCGCCCCNC
TCTTNNNNNNNNNNNNGTCNNNNNCNNNNNNNNNNNNNCCNTTNNNNTNN
NNNNNNNNNNTTNNNNNNNCNNNNNNNNNNNNNTTNNNNNCNNNNTNTNN
NTTTTTNNNNNCCCNNNNNNTTNNNNNNNNNNNNCCCCCTCCCCCCTCCC
GCCCGGG

Query= MSMg01no393_m20.b1 MSMg01no393_m20.b1 CHROMAT_FILE:
MSMg01no393_m20.b1 PHD_FILE: MSMg01no393_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:55 2005
         (473 letters)



>mm_chr5_83149137_83150009
          Length = 873

 Score =  816 bits (422), Expect = 0.0
 Identities = 466/494 (94%), Gaps = 25/494 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaaaagatgaaacacaaatagctgagaagcacttctagaaatgtgttacagca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaattctcaaaagatgaaacacaaatagctgagaagcacttctagaaatgtgttacagca 243

                                                                       
Query: 65  ttagtcatcagggaaatgcaaatcaattcgactctgaaatttatacaagtcagaatcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttagtcatcagggaaatgcaaatcaattcgactctgaaatttatacaagtcagaatcaca 303

                                                                       
Query: 125 aagatcagtaaaacaaatgacaactcatgttgtccaggatctggaaaggaggatacttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aagatcagtaaaacaaatgacaactcatgttgtccaggatctggaaaggaggatacttag 363

                                                                       
Query: 185 tcatttctgaa---ctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcc 241
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcatttctgaagtcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcc 423

                                                                       
Query: 242 tcctcct--tctt----ttcctcctcctcctcctcctc------------ttcctcctcc 283
           |||||||  ||||    |||||||||||||||||||||            ||||||||||
Sbjct: 424 tcctcctcctcttccttttcctcctcctcctcctcctcctcctcctcctcttcctcctcc 483

                                                                       
Query: 284 tccctctcttcctcctccttcatctttctacctttcatgatgcaatctcttcaagtctga 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tccctctcttcctcctccttcatctttctacctttcatgatgcaatctcttcaagtctga 543

                                                                       
Query: 344 caaaagtggaagataagaaagtaaggaattatttggattcagcaaatactgctaaatata 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 544 caaaagtggaagataagaaagtaaggaattatttggattcagcaaatactgctaaatatc 603

                                                                       
Query: 404 tgttttaatattttagcacagattatcttagtagatagctcttcatttactctttct--- 460
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   
Sbjct: 604 tgttttaatattttagcaaagattatcttagtagatagctcttcatttactctttctttc 663

                         
Query: 461 -gggatcttatgta 473
            || ||||||||||
Sbjct: 664 tggtatcttatgta 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 133
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)