BAC Information

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BAC

Clone NameMSMg01-393P19
Chromosome5 (Build37)
Map Location 3,725,707 - 3,726,170
singlet/doubletsinglet
Overlap geneAnkib1
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik
Downstream geneKrit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393P19.T7 (MSMg01no393_p19.b1)MSMg01-393P19.TJ (MSMg01no393_p19.g1)
ACCAG495150AG495151
length799775
length of high quality
(start - end)		486 (37 - 522)464 (70 - 533)
definitionCHROMAT_FILE: MSMg01no393_p19.b1 PHD_FILE: MSMg01no393_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:11 2005CHROMAT_FILE: MSMg01no393_p19.g1 PHD_FILE: MSMg01no393_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATGTCACTATACGACTCACTATATTCCGAGGATCCGCGGAATTCTTT
GTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCC
ATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCCGTACCCATATCTTCAAGGCTTTTCCCCAGTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTTG
ATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATGCGCATTCTTCTA
CATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTT
CTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAAG
TGTGTGGGTTCATTTTCTGGGCCTTCATTTCCATTCCCCTTGGCCCACTT
TGTCTGGCTCTCTCCCAGCACCCAGGCGGGTTTTACTCACCACGGCCCCT
GTTGTCACACCCTTATGCCTGGCCTCGGGGGGATTCCCCCCCTAGGTGTT
TTTTTTTCCCTTCGAGAGAAAGTGTTTTGTCTCCCCCGTCGTTTTGTTTT
GGTCTGTGATTAGGGTGAGTGGGTCGGTTGTCGCTCGGTGTGTGTGGGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGACCAGAGCCTAAGCTCTGTCATGGCCTTT
CATCTTCCATGGACCTGGGTCATTGACAGTCTGATATATCAGGGCAGCAG
AAAGGGTCAATTGGTGCATTTCTTCACATGTTGAGAAATTTACCATTCAC
CACCACACCCATGCTTCATTAACTCATTGTTCATGCTGTAGTTCTACTCT
CATTTCTGAATTAGTGAGGCAGAGTCAGTAGCAGTGAATAATAAAAATGT
GTAACTACAAAGATGAGAAATTTTTCTCTTAAATGTTTTGAAAATTTACC
TTTAGGGCACATGAATAGAACTTATTGCTGAGAATTTTCTTGGTATTTTA
GTTTTTCTCAGTCTCATTTAGCCAGAAAAGTAGCAATCTGGTATTGTTTT
AATTACTATATCCAAACTCTAGTAAGCAAACTTTTTCTGTAAAGAGGGAA
ACAATAAATGCTTTACATAACTATGTATCAATGGTCTTTGTGACAACACC
TCAATTTTGCTGTCACAACTTCTAACAAATACAATAATACATAAATAAAC
TCCCTTAGAAAGTCTTAATTGTGCTTTCACAAAATTTCACTTTTAAAAAT
AGGTATACGTAATACTTTGCTGACCTCTAACCCCCCACAATTTTGCTTTA
ATTTTAAAAGAACAGCCCGAAACATAATGATGGGGAAGGGGGAGGTCCAA
ACGGGGCCTTTTTTTTATATAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_p19.g1 MSMg01no393_p19.g1 CHROMAT_FILE:
MSMg01no393_p19.g1 PHD_FILE: MSMg01no393_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:12 2005
         (464 letters)



>mm_chr5_3725507_3726370
          Length = 864

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaccagagcctaagctctgtcatggcctttcatcttccatggacctgggtcattgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccagagcctaagctctgtcatggcctttcatcttccatggacctgggtcattgacag 260

                                                                       
Query: 61  tctgatatatcagggcagcagaaagggtcaattggtgcatttcttcacatgttgagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgatatatcagggcagcagaaagggtcaattggtgcatttcttcacatgttgagaaat 320

                                                                       
Query: 121 ttaccattcaccaccacacccatgcttcattaactcattgttcatgctgtagttctactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccattcaccaccacacccatgcttcattaactcattgttcatgctgtagttctactc 380

                                                                       
Query: 181 tcatttctgaattagtgaggcagagtcagtagcagtgaataataaaaatgtgtaactaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatttctgaattagtgaggcagagtcagtagcagtgaataataaaaatgtgtaactaca 440

                                                                       
Query: 241 aagatgagaaatttttctcttaaatgttttgaaaatttacctttagggcacatgaataga 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgagaaatttttcttttaaatgttttgaaaatttacctttagggcacatgaataga 500

                                                                       
Query: 301 acttattgctgagaattttcttggtattttagtttttctcagtctcatttagccagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttattgctgagaattttcttggtattttagtttttctcagtctcatttagccagaaaa 560

                                                                       
Query: 361 gtagcaatctggtattgttttaattactatatccaaactctagtaagcaaactttttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagcaatctggtattgttttaattactatatccaaactctagtaagcaaactttttctg 620

                                                       
Query: 421 taaagagggaaacaataaatgctttacataactatgtatcaatg 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagagggaaacaataaatgctttacataactatgtatcaatg 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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