BAC Information

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BAC

Clone NameMSMg01-394D19
Chromosome5 (Build37)
Map Location 149,901,387 - 149,901,825
singlet/doubletsinglet
Overlap genenone
Upstream geneC130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1
Downstream geneEG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394D19.T7 (MSMg01no394_d19.b1)MSMg01-394D19.TJ (MSMg01no394_d19.g1)
ACCAG495341AG495342
length869774
length of high quality
(start - end)		---439 (79 - 517)
definitionCHROMAT_FILE: MSMg01no394_d19.b1 PHD_FILE: MSMg01no394_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:33 2005CHROMAT_FILE: MSMg01no394_d19.g1 PHD_FILE: MSMg01no394_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCCCTTTGCTCCGCTATACGACTCCTATATTCCCGCAGGATCCGC
GGAATTCCTCCTGGTCCCCCATGTCATTTGACACATTGTACAGTGCAGAA
TAGCAGCCACATAGGCTGGGGTGAATGGATGGATGGGTGAATGGATAGAT
GCTTGCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCTCTTCCCCCCTTCCC
TTCCCTCCTCCCCCCCCCCCCCCCCCTCTTCCCCCCCCCCCCCCCCTCCT
CCCCTCCCCCCCCCCTCCCTCCTTCCCTCCCCTCCCCCCTCCCCTCTCCC
CCCCTCCCCCCCCTCTCCCCCCCCCCCCCCCTTCCCCTCCCCTCCTCCTC
CCCCCCTTCCCCCCCCCCCCTCCCCCTCCCCTCCCCTCCCTCCCCCCCCT
CCCCCCCCCCCNCTCCCCCCCCCCCTTCTCCCCCCCCCCCCCCCCCCCTT
CCCTTTTTCTTTCTCCCCCCCCTCCCCCCCCCCCCCTCCCCCCCCCTCCC
TCCCCCCCCCCTCCCCCCTTCCTCCTCCCCCTTCCCTTACTCCCTCTCCC
CTCCTCCCCCTTTCCCCCCCTCCTCTCTTCCCCCCCCCCCCCCTTCCCCT
CCTCCCCCTCCCCCCCCCCCTTTCTTCTCCCTCCCCTTTCTCCCCTCCCT
CCCTTCCCCCCCTCCCTCCCCTCTCCCCCTCCCCCCCCCTCCCTCCCCCC
CCCTTCCCCCCTTTCCCCTCCTCTCCCCCTCCCTCCCCCCCTCCCCCCCC
CCCCTTCCTCCCCTCCCCTCCCTCTCCTCCCCCTCTCCCCCCTTTTCCCC
CCCCCCCCTCCCCTCCCCCTCCCCCTTTTCCTCCCCCCCTCCCTCCTCCC
CCCTTTTTTCCCCCCCCCC

NCCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTAAACAAACACAAACAAAA
CCAAACCAGAGTAAACTGTGCCCCAGCCACAGTGACTGCCTTAAGTTGAA
TTTTAAATGCATCTGCCAATAATCTGAAGTACTCTTGAGGACTTCATTGA
GACCCAGGAATAAGATAAAGGAATGGATAGCTCAAGGACCACAGGCTAAG
TGGAAAATCACCAGCAACATAAACGCTAAGAGTCTTGGCCAAGATACTCA
CTTGACGCAAAATACATGTATGGAAACTTGATCTCAGAGGTATTTTGGTA
TCCCAGCATTTGCATGGCTTAGAAGTTTCTAACCCAGGGCTGAAACCATC
TGCAAATATCAGATAGTTAGAGGGCTTGTCATGGTCTCCAAAATGTTCGC
AAGCCCTTGCTTTAAAGGAAAGCCAAGGTTAAAATAGAGATGTTTTATGG
CTAGTAAAGAAGGTTGAATGGGCAAAAGAGCCTGCTGTGCCGACCAGAAG
ACATGAGTTTGATCCCTGGATTCATGGTGGAAGGAGTAAGAGGTGACCCT
CTAAAACAACCTCTGAGTTGTGCCTGGTGGGGCATGCCTTTTATCCCACC
CCCCCGAAGCCAAAGAAAGGCCATTTTAATTGGGGCCCCCCCAAATATAG
AACAGGTCCTCAACATCCACGTTATACAATAAAACTTTTTCCCTCCCTCC
TAAGAAGCGAAATTTTATCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_d19.g1 MSMg01no394_d19.g1 CHROMAT_FILE:
MSMg01no394_d19.g1 PHD_FILE: MSMg01no394_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:33 2005
         (439 letters)



>mm_chr5_149901187_149902025
          Length = 839

 Score =  810 bits (419), Expect = 0.0
 Identities = 434/439 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttaaacaaacacaaacaaaaccaaaccagagtaaactgtgccccagccacagtgactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttaaacaaacacaaacaaaaccaaaccagagtaaactgtgccccagccacagtgactg 260

                                                                       
Query: 61  ccttaagttgaattttaaatgcatctgccaataatctgaagtactcttgaggacttcatt 120
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gcttaagttgaattttaaatgcatctgccaataatctgaagtgctcttgaggacttcatt 320

                                                                       
Query: 121 gagacccaggaataagataaaggaatggatagctcaaggaccacaggctaagtggaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacccaggaataagataaaggaatggatagctcaaggaccacaggctaagtggaaaat 380

                                                                       
Query: 181 caccagcaacataaacgctaagagtcttggccaagatactcacttgacgcaaaatacatg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 381 caccagcaacataaacgctaagagtcttggccaagatactcacttgacacgaaatacatg 440

                                                                       
Query: 241 tatggaaacttgatctcagaggtattttggtatcccagcatttgcatggcttagaagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatggaaacttgatctcagaggtattttggtatcccagcatttgcatggcttagaagttt 500

                                                                       
Query: 301 ctaacccagggctgaaaccatctgcaaatatcagatagttagagggcttgtcatggtctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaacccagggctgaaaccatctgcaaatatcagatagttagagggcttgtcatggtctc 560

                                                                       
Query: 361 caaaatgttcgcaagcccttgctttaaaggaaagccaaggttaaaatagagatgttttat 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaatgtttgcaagcccttgctttaaaggaaagccaaggttaaaatagagatgttttat 620

                              
Query: 421 ggctagtaaagaaggttga 439
           |||||||||||||||||||
Sbjct: 621 ggctagtaaagaaggttga 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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