BAC Information

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BAC

Clone NameMSMg01-394H10
Chromosome5 (Build37)
Map Location 113,255,519 - 113,255,709
singlet/doubletsinglet
Overlap geneMyo18b
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneAdrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394H10.T7 (MSMg01no394_h10.b1)MSMg01-394H10.TJ (MSMg01no394_h10.g1)
ACCAG495514AG495515
length879789
length of high quality
(start - end)
191 (75 - 265)301 (114 - 414)
definitionCHROMAT_FILE: MSMg01no394_h10.b1 PHD_FILE: MSMg01no394_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:51 2005CHROMAT_FILE: MSMg01no394_h10.g1 PHD_FILE: MSMg01no394_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTATACXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAAGAGGATCCG
CGGAATCATTTCTTACGATCAGATACTTGCATCATCTTCAAAGGACCCAT
TTGCCAAAGTGACTGAGTGTACTTGCTTCTCGAACCTGCACCATGAATGC
ACCAGGCATCTCTAACCACTGAACCCACAACCATCCTTCATTGGTAGCTC
CACTGGGGACAGGAGGGTGTGAGGGGCGAGGTGAAGCTTCACGGGTTATA
GCAGGACTGGAAACAGGAACGCAGGGGCAAAGAATTGAGACAGATTGTGT
GTGTGCGTGTGTGTGTATCTTTTTTTTTCGCCCACCTGTTTTCCCATCCT
CTTCCTTCTTCCTTCTCTTATTCCCCCTTTCCCCCTTTCCCCTTCTCTTC
TTTTTCTCTTCTTTCCTCCCCCCCCCCCCCTCTTCCTTTTATCACTTCCA
CTACTTTCTATTACCCTTCCCCCTTCTTTCCTTTACCCATTTCCCCTTCC
ACTTCATCCTCCCTTTTCCTCCCCCTCCCCCTTCCCTCTTCCTATCTTTC
CATCTCCCCTCCCCCCCCTCCACCACTCCTACCTTCTTCTCTTTCCATCN
CCCATCCTATATTCTCTCCCCCACCTTTCCACCTCTCTTATTCCCCCATT
CCCCCCTTTTCTCGCTACCATCCCTCACCCTTCCTTCTTTCCTCCCATCT
TTCCTATTCTCTCTTACCCCTTCTACTACCCATTTTCCTCTCTCCCCTTT
CTCTCCCATTCCTTTTCTTTCTTCCCCCCCCCTCTTCTTCCTTCTTTCCT
TCCACCCACTCTCTTCTTTACCCCTCTCCACCCTCCTTTTCTCCCCCTAT
CTTCTTCTCTTACTTCCCTTATCTCCCCN
TCCCCATGCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCTCTGCTCTTGACCACA
GATGTGATGTGTCCAGCTGTTTGGCGCTCCGATCATTGTGATAGCCCTGC
TATGACGGACTACAAGCTGGAACTGTAACCTGAAAATGAGCTCCCTTCTC
CCCTAAGGTGCATCTCCCCTCCCCCAGGGCATTTTATCCAGCAACAAGAT
TCCATTGATGTTTATTATAGTACTGGTGGCAGTAGCTGAGTTGTGGAATC
AGCCTGCATGTCATCAACAGATGTCAGATAAAGAAAATATGGCAATGCAC
ATAATAAAAAGTGAAATGGTGTCGTTTGCAGAAAGCAAGGCAGCTGGAGA
TGATCATATTTAGCAATTTAAAACTATACTCAGAAAGACAGATATTGGTT
TTTTCCCCTTCATTTGTGAACTCCACATTTTATACAGACACATATACTCG
TGTGCGCGAGCTCGTTTGTGTGTTCCTTCCTTCCATGTCCTTGTCTTTAC
CTTTTACTAGCCCCCCCCCTTCCTCTCCTTCGCCCTTATATCACTTTTTC
TCCTTTCACCCTCCTATTTACTTTCTATCCTTCCTTTTTTTTTACCAACC
CCTTTACTTATTCTTTTCTCCCTTTAAACTAATTTATTCATCGCCCCCCC
CCCCTTCTTTTTATTTTTAATATATACCTCTCTACCCCTTTTCCCTATCC
CCCTTATCTCCTTCCTTATTCCTTTTCCCTTCTTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_h10.b1 MSMg01no394_h10.b1 CHROMAT_FILE:
MSMg01no394_h10.b1 PHD_FILE: MSMg01no394_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:51 2005
         (191 letters)



>mm_chr5_113255319_113255909
          Length = 591

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgcatcatcttcaaaggacccatttgccaaagtgactgagtgtacttgcttctcgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgcatcatcttcaaaggacccatttgccaaagtgactgagtgtacttgcttctcgaa 260

                                                                       
Query: 61  cctgcaccatgaatgcaccaggcatctctaaccactgaacccacaaccatccttcattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcaccatgaatgcaccaggcatctctaaccactgaacccacaaccatccttcattgg 320

                                                                       
Query: 121 tagctccactggggacaggagggtgtgaggggcgaggtgaagcttcacgggttatagcag 180
           |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 321 tagctccactggggacaggagggtgtgaggggtgaggtgaggcttcacgggttagagcag 380

                      
Query: 181 gactggaaaca 191
           |||||||||||
Sbjct: 381 gactggaaaca 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)