BAC Information

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BAC

Clone NameMSMg01-395B05
Chromosome5 (Build37)
Map Location 123,698,580 - 123,698,973
singlet/doubletsinglet
Overlap genePsmd9
Upstream geneTect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd
Downstream geneWdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395B05.T7 (MSMg01no395_b05.b1)MSMg01-395B05.TJ (MSMg01no395_b05.g1)
ACCAG495980AG495981
length804772
length of high quality
(start - end)
---394 (79 - 472)
definitionCHROMAT_FILE: MSMg01no395_b05.b1 PHD_FILE: MSMg01no395_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:48 2005CHROMAT_FILE: MSMg01no395_b05.g1 PHD_FILE: MSMg01no395_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTTAATTTNNNNNNNNNTNTNNNNTTCCTTATTCCTANAGGATCCGC
GGAACACTTCATCGTCCTTTNNNAANACTGCTTTGGAATGAAAAGATGGC
GCAAGANTCGGGGAGATTNCTCTGNNCTATTANNAACNCNNNANNNCNNN
ACTGGATCACGNATTCTGCTCTCTGNNNTAATTAAACNCCCAATCTTGTT
CTTTCTCTCCAAANNAACCCNNCCCNANANTACANNCTGTTGATTCCNTT
CTGNNTCCCTCCCTGATCNTTTNNCCNNTTCCTTCTTCCTTGTCCNNNNA
NNTCCCGAATTTCTTCCCTGTTTACCCCCCCCACCTTTNTCNAANNTNTT
TTTNCTTTTNNCCCCGNTTGGTCCCCCTCCCCCCCCCCTTTNNAAAACNT
TNNTTACTTTCCCGGGTTTTTTTTTTTNAAANTNTTATTTTTNNTTTTTT
TTTTTTTTTTTNTTTTTTTCTTTCTTTTCTTTTTCCTTTTNCCCTCTTTT
NNNTNNNNTTTTTTTTTTTTTCTTTTTTNTTCCCCTCTTTTTCTTTTTTT
TTTNTNTTTNNNTTTTTTTTTTTTTTTTTTNNTTNTTTTTTTCTTTNNCC
CCTTTTTTCCCTTTTTTTTTTTTTTTTTNTNTNNNNTNNCTTTTTNTTCC
CTTTTTCTTTTTTTTTTTNNNNNTTNNNNCTTCCCCNNTTTTTTTTTTTT
TTTTTTTNNTNNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTNCNNCTCTT
TTTTTTTTTTTTCCTTTTTTTTCCTCCCCCTCTTCCCCCCCCTCCGCCCC
CGCG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGATTATGAGCCAGTGAGT
GGGGATGACTCTGGCGAGTAATGATTTGATGTCATTTTCCTTTTGGAGAC
TGACTCAGTGTGTAATCCTGACTATCCTGGAATTCCCTGTGTAGACCAGG
CTGGCCTTGAGCTGACAGAGATCCCCCTGCCTCTGCCTCATTAGTATTGG
GATGAGAGGCATATACTGACATGGCTGGCTAGACTCTGAGGAATATGTAT
TATACATATATAATTTATACTTATTTTTGAGAATTTCGTACATGCACATA
GTACATTTCTATATTTCCTGTCATCTCAAGTCCCTCTCAGACCTCCCCTT
GTACCCACTTCCCAGGTTCTTGCCCTCTTTTGTTTTTTTTCTTTTTAAAT
AAATAACCTACTAAGTGCCATTTGTGCTGGCAGTATATTCATGGAGTGGG
ATCTTCTCCTGGAGGAATGTGGTCTAACTTTCCTAGACCCCACCCCTAAC
CTCCTCAGGACTTTGGGAACCCCCTTTTTTTCCTTGCAACCTGGCCCTTC
CTGTAGCCTCATTCTTATTTCGACATTCGCCCCGCTAACTTAAGAAGTTT
TCTCTCTGCTTTTTTTTTCCCTTTCAGTTCCTTCCCTGTTACCCCTCCCC
CCCTTATTTTCCGCCTCCCTTTTTCCTCACCTTCCATCTCACTTAGCCCC
GTGCTCGACCTATTCCTGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_b05.g1 MSMg01no395_b05.g1 CHROMAT_FILE:
MSMg01no395_b05.g1 PHD_FILE: MSMg01no395_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:48 2005
         (394 letters)



>mm_chr5_123698380_123699173
          Length = 794

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagattatgagccagtgagtggggatgactctggcgagtaatgatttgatgtcatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagattatgagccagtgagtggggatgactctggcgagtaatgatttgatgtcatttt 260

                                                                       
Query: 61  ccttttggagactgactcagtgtgtaatcctgactatcctggaattccctgtgtagacca 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttttggagacggactcagtgtgtaatcctgactatcctggaattccctgtgtagacca 320

                                                                       
Query: 121 ggctggccttgagctgacagagatccccctgcctctgcctcattagtattgggatgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctggccttgagctgacagagatccccctgcctctgcctcattagtattgggatgagag 380

                                                                       
Query: 181 gcatatactgacatggctggctagactctgaggaatatgtattatacatatataatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatatactgacatggctggctagactctgaggaatatgtattatacatatataatttat 440

                                                                       
Query: 241 acttatttttgagaatttcgtacatgcacatagtacatttctatatttcctgtcatctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttatttttgagaatttcgtacatgcacatagtacatttctatatttcctgtcatctca 500

                                                                       
Query: 301 agtccctctcagacctccccttgtacccacttcccaggttcttgccctcttttgtttttt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtccctctcagacctcccctcgtacccacttcccaggttcttgccctcttttgtttttt 560

                                             
Query: 361 ttctttttaaataaataacctactaagtgccatt 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctttttaaataaataacctactaagtgccatt 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)