ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCAAGGAGTTTAGTGCTTACATTTTCAGAAGCAGAGTATTTCCTATA
AAGGTTTCTGGGGCTCTAATAATTCTCTCCAAGGTAAAAACAAAAAACAA
AAACCAGTACAGAGACAAGTGGATATTATAACTAAGTCCATCAACAAATG
AGGTTTTCTTTGTAATGACTCCAACTAAGCTTGCATAAAATACGGAAGGC
CAGTTACTGCACAACTCATTATGTGTAGCCCCTCTTTTCCTTGAATGCTG
TAGGCCATCACGTGCTGGGGAGTCGGCCCTTCATGAAAACAGCAGCCGCG
CCCCATCCCTTCTGATACACGCCATAGTGCAAAGGTCACTCCAGGCCTGG
AACTCATTAGAGCACATTTTCTAACATCCTATAGCAACCAGTCTTCTTTC
TGGCCCTCAATTAAACTGCCTTAAAAACAGATGTTAAAACTGCTCTCTAA
TTTTCAAAACAGTGACCCTGTAATTTGTAATGCGACACATACTATGTATG
TTTTGCTTTTAGAATATTTTTGTCAGTCTTTAGAAACAGCTTTTACTTCC
CATGAGTATTTCCTAGTACAATTTTCCTAGGACAAGTCAGAACAAAGAAC
TCCTCTACCTTCTGCTTTTCTGGCCCAAAGCTTTTTCTTAATTTTAAGAA
ATGCCTTAAAACCCCCAAACCCTGAAAAGAAAAAAGGGGTTAAACACCAA
ATTTTTCCCATTCACCAAAAAAAAAATCACCCCCCGGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATAACAATTAATAAGCATACACATT
TTCTTGTCTTCTAAGATTTATACCTGTGAGGAGCCGCCCTCACATTTGCC
ATTATAAGATGGCACTGACAGCTGTGTTCTAAGTGGTAAACATAGTCTGC
ACACATGCAGGGGCAGTTTTCCCACCATGTGTTCTGCCTTTCCCGTGATG
ACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACGTCCTAGGT
GGAGGATAATTCTCCTTAAAAGGGACGGGGTTCTGGCACTCCCTCCCTTC
CTTCCTTGCTTGCTCTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAA
AGCTTTGCCGCAGAAGATTCTGGTTTGTTGCGTCTTTCCTGGCCGGTCGT
GAGAACGCGTTATTAACAATTATATAGAGAAAGAAGAAATAGGACTGAAT
AAACGTGTGCAGAAGGATCCTGCTGTGGCGTCGTTCTTGCTGGCGAGTTG
GGGGCGCGCGCAACAAGTGGTGCCGAAAACCGGGAAAAGAACATCTTTCG
GCACGAGCGAAAAACCCTGCTTAATGGGAGATTCGAACTGCTTCCCGGGA
AAAAAAGGTTAATAAAGGTCCCGTACAAAAACTGTTGAAAAAGATCCCGG
GTGGATCCAAAAACCTTCCCTCTTGGACGTTCCTCGTTTTTATAAAAACA
AATTTTTTCCCCTTTTTTCCCCTTCCTCAAAATACG

Query= MSMg01no395_f22.b1 MSMg01no395_f22.b1 CHROMAT_FILE:
MSMg01no395_f22.b1 PHD_FILE: MSMg01no395_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:12 2005
         (523 letters)



>mm_chr5_74988999_74989921
          Length = 923

 Score =  990 bits (512), Expect = 0.0
 Identities = 518/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcaaggagtttagtgcttacattttcagaagcagagtatttcctataaaggt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ggaattcttcaaggagtttagtgcttacattttcagaagcagagtatttcctataaaggt 664

                                                                       
Query: 64  ttctggggctctaataattctctccaaggtaaaaacaaaaaacaaaaaccagtacagaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttctggggctctaataattctctccaaggtaaaaacaaaaaacaaaaaccagtacagaga 604

                                                                       
Query: 124 caagtggatattataactaagtccatcaacaaatgaggttttctttgtaatgactccaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 caagtggatattataactaagtccatcaacaaatgaggttttctttgtaatgactccaac 544

                                                                       
Query: 184 taagcttgcataaaatacggaaggccagttactgcacaactcattatgtgtagcccctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taagcttgcataaaatacggaaggccagttactgcacaactcattatgtgtagcccctct 484

                                                                       
Query: 244 tttccttgaatgctgtaggccatcacgtgctggggagtcggcccttcatgaaaacagcag 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttccttgaatgctgtaggccgtcacgtgctggggagtcggcccttcatgaaaacagcag 424

                                                                       
Query: 304 ccgcgccccatcccttctgatacacgccatagtgcaaaggtcactccaggcctggaactc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccgcgccccatcccttctgatacacgccatagtgcaaaggtcactccaggcctggaactc 364

                                                                       
Query: 364 attagagcacattttctaacatcctatagcaaccagtcttctttctggccctcaattaaa 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 attagaacacattttctaacatcctatagcaaccagtcttctttctggccctcaattaaa 304

                                                                       
Query: 424 ctgccttaaaaacagatgttaaaactgctctctaattttcaaaacagtgaccctgtaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctgccttaaaaacagatgttaaaactgctctctaattttcaaaacagtgaccctgtaatt 244

                                                   
Query: 484 tgtaatgcgacacatactatgtatgttttgcttttagaat 523
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgtaatgcgacacatactatgtatgttttgcttttagaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)