BAC Information

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BAC

Clone NameMSMg01-397D15
Chromosome5 (Build37)
Map Location 90,227,757 - 90,228,092
singlet/doubletsinglet
Overlap geneAdamts3
Upstream geneMkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397D15.T7 (MSMg01no397_d15.b1)MSMg01-397D15.TJ (MSMg01no397_d15.g1)
ACCAG497616AG497617
length801817
length of high quality
(start - end)
243 (71 - 313)339 (70 - 408)
definitionCHROMAT_FILE: MSMg01no397_d15.b1 PHD_FILE: MSMg01no397_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:35 2005CHROMAT_FILE: MSMg01no397_d15.g1 PHD_FILE: MSMg01no397_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACAATCCGCGGAATT
CATTGTTTTTCCCAGCTGAGTAGTACTCCATTGTGTGAATGTACCACATT
TTCTGTATCCATTCCTCAGTTGAGGGACATTTGGGTTCTTTCCAGCTTCT
GGCTATTATAAATAAGGCTGTTATGAACATAGTGGAGTATGTGTCGTTAT
TACAATTTGGAGCATCTTCTGGGTATATGCCCAGGAGAGGAATTGCTGTA
TCTTCAGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACTGATTT
CCAGAGTGGCTGTACCTTCTTGTTTTCCCACCAACAATAGAGGAATGTTC
CTCTTTCTCCACATCTTTGCCAGCATCTACTGTCACCTGAGTTTTTGATC
TTAGCCATTCCGACCGCCGCGAGGTGGAATCTCACGTTTGCTTTGATTCG
CACTTCCCTACAGATTACGGTTGTTGACCACTTTTCCTCGCCTCCCTCTT
ATCTTCTCTTCATTCTCCTCTTTTTTTATCTTTTTTCTCCCCTTTTCTCA
CCTTTCCGCTTTCGCCCTTTTTTTTCTACTTGCTTTTTTTCCTGCTTCTT
TCCTTCTTCCCCCCCCTTCCCCCCCCTCCTTTCCCCCTCTTTCCTATCTC
TTTTTTCTCCTTTTCTTACTTCCCCCCCTCTCCTTCTCTCTTTCCCACTC
CTATTCTCTCATTCCCCCTCCTCTTTTTTTTTCTCGTCCCCCTATCCCTT
TTTTCTTCCCTGCTCATTTCTCCTTCCCCTTCTTCTCCGTTCTCTCCCTC
C
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGGTACTGGTATCCATTTGGTAAAGTCTG
GCTGGACCTGGAATCGCAGCCTGAACTGCAGTCTGTTCTTGTACTTAGAC
CTAGGAACATTTGCATGCATTGATGAGAGCAGAGCCAGGCAAGAATCAGG
AATATGAGAGAAACAGAAGCTAACACTCATGGTTCGAATGACTTTAGACT
GCATTTATTTCTTCATTATATTGTGTGAGCCATGAAAAGGCTCTTTCACT
TATGAAAATTATTGTTTGTTTCTTTCCTTGGTATGTAAAAACATTAATTG
TAGGTTTTAAATTTGACTTGGCAGATTGGCTAAGGAGAAGGGAGGAGGTT
ATGGGTAGCCCCCCTCTTCCCCTTCTCTTTTTTTTCCTTTTCCTTTCCCT
TCTTTCCCCTCCTTCTCTTTTTTCCTTGTCCTCTTTCTCCTCTCCTTCCT
TTCCCTTTTTCTTCCTCTCTTCCTTCTTCCCTTCTTTTTTCTCCTCCTTT
CCCATCCTTTTCTTCCCCTCTCTTTTCCCTCCTCTTCCTTCCTTTTTCCA
CCTTCCTCTTCTCTATGTTCTCTTCTCTCTCTCGTCCCTCGTATACTACC
TCTTCTCCTAGCAATTTTGTCCCTATTTTTCTCATTATTACCCTCCTAAT
CTTCCTATTCCCTATTTCCTCACATTTTTTTACACCCTTCTTGTCTTTTT
CCCTTTTTTCTCCCCTCACTCCTATCACTCTTCCTTTTCTTCGTCTCTTT
CCTCACTATTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_d15.g1 MSMg01no397_d15.g1 CHROMAT_FILE:
MSMg01no397_d15.g1 PHD_FILE: MSMg01no397_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:35 2005
         (339 letters)



>mm_chr5_90227557_90228295
          Length = 739

 Score =  603 bits (312), Expect = e-177
 Identities = 330/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggtactggtatccatttggtaaagtctggctggacctggaatcgcagcctgaactgc 60
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 536 tcaggtactggtatccatttggtaaagtttggctggacctggagtcgcagcctgaactgc 477

                                                                       
Query: 61  agtctgttcttgtacttagacctaggaacatttgcatgcattgatgagagcagagccagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 476 agtctgttcttgtacttagacctaggaacatttgcatgcattgatgagaggagagccagg 417

                                                                       
Query: 121 caagaatcaggaatatgagagaaacagaagctaacactcatggttcgaatgactttagac 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caagagtcaggaatatgagagaaacagaagctaacactcatggttcgaatgactttagac 357

                                                                       
Query: 181 tgcatttatttcttcattatattgtgtgagccatgaaaaggctctttcacttatgaaaat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgcatttattttttcattatattgtgtgagccatgaaaaggctctttcacttatgaaaat 297

                                                                       
Query: 241 tattgtttgtttctttccttggtatgtaaaaacattaattgtaggttttaaatttgactt 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tattgtttgtttcttttcttggtatgtaaaaacattaattgtaggttttaaatttgactt 237

                                               
Query: 301 ggcagattggctaaggagaagggaggaggttatggg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggcagattggctaaggagaagggaggaggttatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)