MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-397H14
Chromosome	5 (Build37)
Map Location	149,442,200 - 149,442,318
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
Downstream gene	2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110
Link	Open Mouse BAC browser

Click to get alignment info.

name	Flt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14254 MGI:95558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039825 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039825
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Pomp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66537 MGI:1913787
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc46a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71706 MGI:1918956
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C130038G02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77521 MGI:1915388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041819 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041819
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 10 Proteins pseudo : _no_value

name	Slc7a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11987 MGI:88117
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041842 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041842
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Ubl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24109 MGI:1344373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2210417A02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70138 MGI:1917388
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100041869 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041869
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Katnal1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231912 MGI:2387638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	8430423G03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71473 MGI:1918723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	1810059H22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69820 MGI:1917070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs

name	LOC667386 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667386
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC100039964 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039964
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Hmgb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15289 MGI:96113
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667410 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667410 MGI:3647532
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 296 ESTs, 9 Proteins

name	LOC100040006 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040006
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Uspl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231915 MGI:2442342
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310047D07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69657 MGI:1916907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Alox5ap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11690 MGI:107505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6330406I15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70717 MGI:1917967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930588N13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75860 MGI:1923110
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 2 Proteins

name	LOC100040037 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040037
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100040062 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040062
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	4930434E21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381693 MGI:1923042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hsp110 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15505 MGI:105053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Flt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129969 GeneID:14254 MGI:95558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FMS-like tyrosine kinase 1 transcript_id : NM_010228.3

name	Pomp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377568 GeneID:66537 MGI:1913787
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome maturation protein transcript_id : NM_025624.2

name	Slc46a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802503 GeneID:71706 MGI:1918956
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 46, member 3 transcript_id : NM_027872.3

name	C130038G02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362771 GeneID:77521 MGI:1915388
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C130038G02 gene transcript_id : NM_029920.5

name	Slc7a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801995 GeneID:11987 MGI:88117
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 transcript_id : NM_007513.3

name	LOC100041842 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254777 GeneID:100041842
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC100041842 transcript_id : XM_001477382.1

name	Ubl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053909 GeneID:24109 MGI:1344373
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-like 3 transcript_id : NM_011908.2

name	2210417A02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254779 GeneID:70138 MGI:1917388
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 2210417A02 gene transcript_id : XM_001477439.1

name	LOC100041869 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254781 GeneID:100041869
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041869 transcript_id : XM_001477450.1

name	Katnal1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956363 GeneID:231912 MGI:2387638
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : katanin p60 subunit A-like 1 transcript_id : NM_153572.1

name	8430423G03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375855 GeneID:71473 MGI:1918723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 8430423G03 gene transcript_id : XM_990235.1

name	LOC667386 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94375857 GeneID:667386
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC667386 transcript_id : XM_990264.1

name	LOC100039964 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254749 GeneID:100039964
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039964 transcript_id : XM_001473858.1

name	Hmgb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326547 GeneID:15289 MGI:96113
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : high mobility group box 1 transcript_id : NM_010439.3

name	EG667410 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375861 GeneID:667410 MGI:3647532
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 296 ESTs, 9 Proteins product : predicted gene, EG667410 transcript_id : XM_990406.1

name	LOC100040006 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254751 GeneID:100040006
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040006 transcript_id : XM_001473934.1

name	Uspl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701435 GeneID:231915 MGI:2442342
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase like 1 transcript_id : NM_001013378.1

name	2310047D07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375863 GeneID:69657 MGI:1916907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 2310047D07 gene transcript_id : XM_990491.1

name	Alox5ap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33563241 GeneID:11690 MGI:107505
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arachidonate 5-lipoxygenase activating protein transcript_id : NM_009663.1

name	6330406I15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363148 GeneID:70717 MGI:1917967
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330406I15 gene transcript_id : NM_027519.2

name	4930588N13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375866 GeneID:75860 MGI:1923110
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 2 Proteins product : RIKEN cDNA 4930588N13 gene, transcript variant 1 transcript_id : XM_132524.6

name	4930434E21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119508423 GeneID:381693 MGI:1923042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930434E21 gene transcript_id : NM_029440.3

name	Hsp110 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145504 GeneID:15505 MGI:105053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 110 transcript_id : NM_013559.2

name	Flt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328180 CCDS:CCDS19879.1 GeneID:14254 MGI:95558
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IPI]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA]; GO:0005021 - vascular endothelial growth factor receptor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0016477 - cell migration [Evidence IGI]; GO:0007275 - development [Evidence IEA]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 note : vascular permeability factor receptor; vascular endothelial growth factor receptor product : FMS-like tyrosine kinase 1 protein_id : NP_034358.2

name	Pomp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385086 GeneID:66537 MGI:1913787
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : proteasome maturation protein protein_id : NP_079900.1

name	Slc46a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21311835 CCDS:CCDS19880.1 GeneID:71706 MGI:1918956
definition	codon_start : 1 product : solute carrier family 46, member 3 protein_id : NP_082148.1

name	C130038G02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75832043 CCDS:CCDS19881.1 GeneID:77521 MGI:1915388
definition	codon_start : 1 note : isoform b is encoded by transcript variant 2 product : hypothetical protein LOC77521 isoform b protein_id : NP_084196.4

name	Slc7a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677433 CCDS:CCDS19882.1 GeneID:11987 MGI:88117
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015359 - amino acid permease activity [Evidence IEA]; GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0005279 - amino acid-polyamine transporter activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cationic amino acid transporter 1 product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein_id : NP_031539.2

name	LOC100041842 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254778 GeneID:100041842
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477432.1

name	Ubl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755925 GeneID:24109 MGI:1344373
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : ubiquitin-like 3 protein_id : NP_036038.1

name	2210417A02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254780 GeneID:70138 MGI:1917388
definition	codon_start : 1 product : hypothetical protein LOC70138 protein_id : XP_001477489.1

name	LOC100041869 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254782 GeneID:100041869
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477500.1

name	Katnal1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956364 GeneID:231912 MGI:2387638
definition	GO_component : GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008568 - microtubule-severing ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : katanin p60 subunit A-like 1 protein_id : NP_705800.1

name	8430423G03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375856 GeneID:71473 MGI:1918723
definition	codon_start : 1 product : hypothetical protein LOC71473 protein_id : XP_995329.1

name	LOC667386 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94375858 GeneID:667386
definition	codon_start : 1 product : hypothetical protein protein_id : XP_995358.1

name	LOC100039964 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254750 GeneID:100039964
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473908.1

name	Hmgb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754208 CCDS:CCDS19883.1 GeneID:15289 MGI:96113
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005694 - chromosome [Evidence IEA]; GO:0005615 - extracellular space [Evidence IDA]; GO:0005634 - nucleus [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0030235 - nitric-oxide synthase regulator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006323 - DNA packaging [Evidence IEA]; GO:0006809 - nitric oxide biosynthesis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006810 - transport [Evidence IDA] codon_start : 1 note : high mobility group protein 1 product : high mobility group box 1 protein_id : NP_034569.1

name	EG667410 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375862 GeneID:667410 MGI:3647532
definition	codon_start : 1 product : similar to mKIAA0060 protein protein_id : XP_995500.1

name	LOC100040006 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254752 GeneID:100040006
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473984.1

name	Uspl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701436 GeneID:231915 MGI:2442342
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin specific peptidase like 1 protein_id : NP_001013396.1

name	2310047D07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375864 GeneID:69657 MGI:1916907
definition	codon_start : 1 product : hypothetical protein LOC69657 protein_id : XP_995585.1

name	Alox5ap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563242 GeneID:11690 MGI:107505
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_process : GO:0019370 - leukotriene biosynthesis [Evidence IEA] codon_start : 1 note : arachidonate 5 lipoxygenase activating protein product : arachidonate 5-lipoxygenase activating protein protein_id : NP_033793.1

name	6330406I15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734078 CCDS:CCDS19884.1 GeneID:70717 MGI:1917967
definition	codon_start : 1 product : hypothetical protein LOC70717 protein_id : NP_081795.1

name	4930588N13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51711287 GeneID:75860 MGI:1923110
definition	codon_start : 1 product : hypothetical protein LOC75860 isoform 1 protein_id : XP_132524.3

name	4930434E21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119508424 GeneID:381693 MGI:1923042
definition	codon_start : 1 product : hypothetical protein LOC381693 protein_id : NP_083716.2

name	Hsp110 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145505 CCDS:CCDS19885.1 GeneID:15505 MGI:105053
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IDA] GO_process : GO:0051085 - chaperone cofactor-dependent protein folding [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : heat shock protein, 105 kDa; HSP105 42 C-HSP product : heat shock protein 105 protein_id : NP_038587.2

name	LOC100039825 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039825
definition	number : 1 pseudo : _no_value

name	LOC100039825 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039825
definition	number : 2 pseudo : _no_value

name	LOC100040037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040037
definition	number : 3 pseudo : _no_value

name	LOC100040037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040037
definition	number : 2 pseudo : _no_value

name	LOC100040037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040037
definition	number : 1 pseudo : _no_value

name	LOC100040062 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040062
definition	number : 1 pseudo : _no_value

name	LOC100041819 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254776 GeneID:100041819
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 10 Proteins product : similar to fus-like protein pseudo : _no_value transcript_id : XR_033181.1

name	1810059H22Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254748 GeneID:69820 MGI:1917070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs product : RIKEN cDNA 1810059H22 gene transcript_id : XR_035221.1

clone name	MSMg01-117C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294F02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-526M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501I20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-516A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325I08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-516A14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-159M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-397H14.T7 (MSMg01no397_h14.b1)	MSMg01-397H14.TJ (MSMg01no397_h14.g1)
ACC	AG497806	AG497807
length	852	866
length of high quality (start - end)	119 (124 - 242)	85 (120 - 204)
definition	CHROMAT_FILE: MSMg01no397_h14.b1 PHD_FILE: MSMg01no397_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:55 2005	CHROMAT_FILE: MSMg01no397_h14.g1 PHD_FILE: MSMg01no397_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:55 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	AAATTTGTGGACGCTAAANGAANCACCAAATGCCTCATCTCCGCGGNAAN CANNCTTTTAGCANCCACCTGACTGCANTATGNAAAACCTGTCCGGTGGT TCCGACACGCTGTTTGTCCCAGTGACAGCTGCCACGTTGCACTTTAGACT TTTAGTTTGTCACTCCTCTCGAAATGTGGCACTGAGGGTCAGCCTGCACC CCGCTTACCTTGCTCTCTCCCTTGTCTCCCTGGTGTCAGGTGCCCACTTT TTTAGAACTTATTTGTTTTGGCTTTGAGGGAGTGACTGAGACTGTTATTT CTTGAACCCTTATTTGCATANNTTGGCCGAGAACAGCCCCTCCCGGGCAA CATTTTCTTCTTCTCGCATTGTCCCGTGCACCAACTCGAAATCTACCGTG TTAGTCTCTCCCCCCCCCCACCATACATCATCCTTTCCTTTTATTCTACA CTCCTTCCCCCCCACTCTGCGTTTTGAAGTATTTTCCCCCTCCCCATTCT TCTCGTCTCGTTTACCTAACTATATCTCCTTGTCCTTTTTCCCGTCCTTC TACCACTTTTTCCCCTGTCTTCCCTCTCTCTCTTTCGCCCTCCCCCACAT TCCTTCTCTTTCCCCTATCTCTTCTTCTTTTCCCTCCTTCTCTTAACTAT CTCCCCCCGCCTCTATTCTTTATTCTTTTATTTCCCCCCCCCCCCTTCCC TTCTTTTTTCCCTTTCTCCTTCCATTCCCCTCTCCCTCCTTCTTTTTCTT TCCCCCCTTCTTTCACTTCCCCCCCCTTTTTCCCTCTTTCCTTTCTCTAA TCCACCGCCCCCACACCCTCCTTCTTCTCTCTTTCTTACTTCTCCCCTTT TT	TGCAGTGGGAGGCCTGGNGGNCGNCTGGCTTACGNCACCTGCNNGAACNA NAGAAGGTTACGNGCACTCCTCCCCCTAGGNNGGNACNCCAGAGAGGGGN AACCNNCAAATTCTTGCCCCATGGCTCCCTCCCCAAATTCCCCATCCTAT TAGTTCATGAGTCAAAGCCTTACTTAAGGTATTTTTATTAAATGTATCCT TATTAACTGTAGCCTTATCTAATGTATCTTTATTTGATGTATCCTGTTTT TTATGAGCCCCTCCCTTTCTGACCCTGGGCTCATTCATGCTGCCGACTCT GACGCCCCAGGTTTTTCGTCTTTTTACCCGGACCGGGAGCGGCCCGACAC CGGCGTTTTTCCCCCCCCCGCTGAGTGGCGGGCGCGCGCCCTGTAGTTTC CTTTTTTTTTTCCCCCCCCCCCGGCTCCTTTTGAGGGTTGTGCCGTTAGC TCCCCTGTTTTTGGTCGCTTTTAATCCGAACCGCCCTTCCCCTCTGTGTC GTCAGCGTCCCCCCGCTCTCTCTATCTCTTCGCCCTCCCTCTTGATCTCT TCCGTCCCTCGATTCCCCCCTTGTGCCCCCGTCCTGCGTTCTTTTCTCTC TCGCCCGCCCGCGCTTTTATTATCGTTTGTTCTGTCGCCCTCCACTTACC CCGCGTATATTACCCACGTCCTCCTGCCCATTAACGTAGCTTAGATGGAT AGCGACGCCCACTTCCTGTTCCTGCTGGCNATCACCGCGCCGTGGCCCGG CTCTGTCGGGCGCCCCGTTCTCGTGCTTGTTTTCTCGCATTGGGTCGCCT CTCCTGGGCCCCTCCGTTCGCGCGTGCTCACTTCTTTGTTTCGGATGCGT TCTCTCCCTCCTCTAT
quality values	Open. Hide. 15 15 15 14 8 10 8 8 8 8 9 10 17 19 24 10 12 3 0 3 7 3 0 3 8 7 7 7 6 6 6 6 6 6 6 6 6 6 7 7 6 12 9 15 8 3 0 3 3 0 3 3 0 0 3 23 8 8 6 6 6 6 3 0 3 10 10 10 10 10 10 8 10 6 6 8 3 0 3 23 23 3 0 3 27 27 47 41 42 50 50 59 59 32 31 20 30 30 37 28 23 34 34 39 37 44 37 37 30 30 16 23 12 16 12 9 9 11 20 12 11 11 16 16 30 23 28 28 28 34 34 48 48 48 48 48 59 48 46 46 43 48 48 59 59 35 35 35 43 43 48 43 37 30 30 44 36 36 28 32 42 42 54 48 48 48 47 47 47 43 44 44 44 39 39 30 30 30 32 33 42 42 42 43 42 39 37 42 32 32 32 37 47 43 57 47 47 59 54 44 44 47 47 48 48 48 57 54 54 48 47 43 43 43 43 47 57 57 59 57 57 57 57 48 48 48 48 48 57 57 41 43 39 43 37 39 39 31 31 20 20 15 23 18 11 11 10 10 11 13 15 14 23 22 36 32 36 37 39 36 43 47 39 39 30 30 30 39 30 28 17 17 17 30 30 32 24 18 13 13 13 12 11 11 15 15 23 23 13 21 22 40 32 39 26 24 15 12 12 12 12 28 28 20 20 20 20 17 19 14 12 12 13 16 11 3 3 3 9 3 0 0 3 11 11 10 10 10 10 9 9 9 12 11 11 11 11 17 15 24 30 25 26 18 12 11 11 15 11 11 15 19 9 8 8 8 8 8 10 12 12 12 10 10 9 9 9 16 16 12 8 8 8 8 8 8 10 11 10 8 8 8 6 8 8 12 10 10 12 8 8 8 8 8 8 12 9 9 9 15 15 10 8 8 8 8 8 15 13 16 18 9 9 9 16 15 13 12 7 6 6 6 9 10 12 9 9 9 9 10 8 12 6 7 8 8 10 10 10 11 13 19 15 8 6 6 8 8 8 8 8 8 8 8 8 8 8 10 14 11 10 8 8 8 8 8 8 8 10 9 10 10 15 17 12 15 12 9 8 8 10 10 18 21 31 24 14 19 12 12 12 12 12 11 10 13 10 12 7 7 8 8 12 10 10 10 13 15 10 15 12 11 8 8 6 8 6 7 8 8 8 6 6 8 8 12 10 8 8 8 8 8 8 8 8 9 12 12 15 16 12 8 8 8 8 10 10 10 10 11 10 8 8 6 6 8 10 12 11 14 13 12 14 10 11 8 9 9 11 13 10 13 10 8 6 6 7 9 10 10 8 8 9 8 8 8 6 6 10 6 7 7 10 8 12 8 8 8 8 9 15 14 9 9 9 12 12 11 9 9 10 13 17 19 14 14 9 10 9 10 8 10 7 7 8 8 10 8 8 8 8 8 10 10 10 11 13 19 16 10 12 15 14 9 9 9 9 9 10 9 10 10 15 13 10 12 11 6 6 6 14 10 10 10 15 10 10 11 8 13 8 8 8 8 8 8 8 12 10 12 10 11 8 8 8 13 19 21 21 13 12 14 15 22 21 12 11 11 11 8 8 8 8 8 8 11 14 18 24 34 23 23 13 10 9 9 9 14 16 17 10 10 10 10 10 10 10 17 12 11 10 9 9 10 10 10 10 10 9 9 10 13 14 11 11 9 13 14 11 15 13 13 11 11 16 13 10 14 8 11 15 8 10 7 7 7 10 10 10 14 14 11 11 10 10 7 8 13 17 13 18 12 12 8 8 8 12 13 10 19 14 17 14 15 15 13 15 10 10 8 10 10 10 10 10 6 6 6 11 10 12 7 8 8 8 8 8 10 8 8 6 6 8 10 10 10 10 11 15 15 8 8 8 8 13 13 8 8 8 8 6 7 8 12 7 7 6 6 8 8 10 7	Open. Hide. 8 8 8 8 10 15 10 13 14 14 15 16 32 22 23 17 3 0 3 3 0 3 3 0 3 25 9 9 6 6 6 6 6 3 0 3 9 9 11 11 9 3 0 0 3 17 15 3 0 3 0 3 27 27 11 9 9 9 7 6 6 3 0 3 6 6 9 10 12 11 9 9 9 12 23 33 59 29 29 3 0 0 3 3 0 3 3 0 3 23 23 37 37 24 9 9 7 7 3 0 3 27 27 3 0 0 3 17 19 21 17 8 8 8 11 13 16 14 14 12 21 19 37 37 40 40 41 48 59 59 48 47 47 57 48 47 47 57 57 57 50 50 50 50 50 50 57 57 68 68 68 68 35 34 15 15 11 11 11 18 23 32 44 43 30 30 20 20 27 30 30 31 31 29 29 37 34 59 54 54 42 43 42 42 43 43 39 29 25 17 18 30 25 28 30 30 36 34 37 28 25 25 23 21 12 12 12 11 11 11 11 11 12 24 28 24 24 12 12 12 22 22 28 25 25 22 30 18 20 20 20 32 32 34 34 28 15 15 12 11 13 17 17 8 8 8 8 7 8 10 12 9 10 11 20 15 18 18 30 27 32 22 15 10 10 10 15 22 25 23 23 18 18 14 12 12 12 12 11 18 18 11 11 11 12 11 10 10 17 12 12 9 18 21 28 22 23 16 15 12 9 9 12 17 21 18 10 10 8 8 8 7 7 7 12 9 3 3 3 3 3 16 13 12 10 10 19 25 17 24 13 13 11 11 11 8 13 13 11 8 7 7 7 10 13 7 6 6 10 10 13 15 9 7 7 7 8 8 8 8 8 8 13 20 10 10 8 8 8 8 10 10 10 10 10 10 8 8 10 10 8 8 8 8 10 8 10 8 8 8 8 8 10 9 10 10 8 8 6 6 8 8 9 8 11 8 8 8 8 13 8 8 8 8 8 21 23 30 29 15 13 8 8 8 8 9 9 10 10 10 15 10 10 10 8 8 8 10 8 8 10 10 9 9 9 9 9 12 12 12 16 11 11 8 8 8 8 8 8 8 8 8 8 8 9 13 13 11 11 11 16 11 11 11 11 8 8 6 6 8 8 8 8 8 8 9 10 10 12 12 12 13 14 10 10 10 9 10 12 13 8 8 6 6 8 8 10 10 11 8 8 8 8 8 9 10 10 8 8 8 10 10 8 8 8 15 12 10 10 8 8 6 6 8 12 12 14 11 8 8 10 8 8 8 9 10 13 10 10 11 8 8 8 8 8 8 8 10 10 11 11 8 8 8 8 8 8 9 9 16 15 14 10 10 10 10 10 8 10 8 8 8 8 9 10 9 9 9 9 13 11 15 13 13 13 13 10 10 14 14 14 10 10 10 13 10 10 11 11 11 13 11 10 10 10 8 8 8 6 6 10 6 7 8 6 6 10 8 10 10 10 8 8 8 8 8 10 13 10 10 8 8 6 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 9 10 12 8 8 8 6 7 10 10 10 8 8 10 9 10 12 8 10 10 9 8 8 8 8 8 8 9 9 9 9 10 11 10 9 8 8 8 8 8 8 6 6 8 10 8 8 11 8 9 9 9 9 9 9 9 8 8 8 8 8 8 10 10 11 11 9 3 0 3 6 6 6 8 6 8 10 8 10 10 10 10 11 11 11 13 11 11 9 8 8 8 8 6 8 7 7 6 6 9 9 9 9 9 9 10 9 11 10 10 8 6 6 8 8 8 8 10 10 19 16 8 8 8 8 8 8 8 8 7 7 8 8 9 9 8 8 8 8 8 11 12 8 10 10 10 11 11 11 11 11 11 12 12 14 10 9 9 9 9 12 10 10 10 10 10 10 6 6 8 8 10 10 10 8 8 6 6 8 8 10 10 10 8 8 6 6 6 6 6 6 8 8 10 10 8 8 8 10 10 11 12 13 13 13

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no397_h14.b1 MSMg01no397_h14.b1 CHROMAT_FILE:
MSMg01no397_h14.b1 PHD_FILE: MSMg01no397_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:55 2005
         (119 letters)



>mm_chr5_149442000_149442518
          Length = 519

 Score =  230 bits (119), Expect = 2e-65
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagctgccacgttgcactttagacttttagtttgtcactcctctcgaaatgtggcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagctgccacgttgcactttagacttttagtttgtcactcctctcgaaatgtggcact 260

                                                                      
Query: 61  gagggtcagcctgcaccccgcttaccttgctctctcccttgtctccctggtgtcaggtg 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggtcagcctgcaccccgcttaccttgctctctcccttgtctccctggtgtcaggtg 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information