BAC Information

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BAC

Clone NameMSMg01-397I13
Chromosome5 (Build37)
Map Location 23,297,471 - 23,297,814
singlet/doubletsinglet
Overlap geneRint1
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7
Downstream gene4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397I13.T7 (MSMg01no397_i13.b1)MSMg01-397I13.TJ (MSMg01no397_i13.g1)
ACCAG497851AG497852
length773792
length of high quality
(start - end)
388 (114 - 501)156 (70 - 225)
definitionCHROMAT_FILE: MSMg01no397_i13.b1 PHD_FILE: MSMg01no397_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005CHROMAT_FILE: MSMg01no397_i13.g1 PHD_FILE: MSMg01no397_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAAACGAACACAATTTCCCACCTAGCGCGGAANCAACCC
CTTGCAACAAACTGTAGAAACAACTTCTGCAAACTGTGTGTCCTGAGATG
TGCACATTCACACACATGTGTACACACACAGACACAAAGTGTAAAACAAA
TGCATACCATCTGTCTGCTGCTGGGTATTCCTTCTCTCTCTTCTCCTTGC
TCCAGAAAACATTCTTTTCCCTTTGTTCTATTTAATTTACTTGTTTTAAA
ATATTTTGGTGCTGAGGGTGTAGCTCAGTGATAGTGTGCTTACCCACCCT
AAGCAATTACCTCATTTAATTCTCAGTTCTACAAAAATAATGAATCAATA
AAGACACACTGCCCAGCAACATGGCTCAGCAGGTAAAGGCACTTTCCATC
ACGGCTGATGTCCTAAGTCTGAGCTCAAGACACACATGGTGGAAGACCAG
AGCTAACTCACAAGTCCTCTGATCTCCACACATACACTATGGCATGCAAA
CACACACACACATACACCAAAATAAAATGAAATAAAAAACTTTATTTACA
AAGAAGAATTATAAGATTGTTTGCAGACATGAAACACACGAGGCCCCTGG
TAAGAAGAAAAAAAACAAGGCTAAGTCTCAACTTCCCCACTACTTATTTT
ATATTATTGGCCGCCCCCCCCCCAACCGAATCAAAAAACGGAACTATCAG
GTTCCTGTTTTCAAACCCAAATTCTAATGGCCCATTTTAAAAATAAAAAA
ATTGTTTCTCTCCTCCTTAAAAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAATCAGCCAAGCACTGTGACGGCCGCCA
TTAATCCCAGCACTTAGGAGGCAGAGGCAGGTAGATCTCTGTGGGTTCAA
GGACAGCCTGGTCTACAGGGCAAGTGTCCAGGGCCGTTACACAGAGAAAT
CTGTTGGGGATGTAGGAGGGGGNNNNNNNNNNNNNNNNNNNNTTTTTTTT
TNNNNNNNNNNTNNTNNNNNNNNNNNTNNNNNNNTNNNNNNNNNNNNNNN
NNNNNNTTNNTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTT
TCCCCCCCCCTTCCGGGGGGGTTTCTTTTTTTCTTCTTTTTGTCCCCCCC
CCCCCCTTTTTTTTTTTCCGTCTTTCCTCTTTCTTTCTTTCGTTCTCTCG
CCCTCTTTTTTCCTTCTTTCTCTCCCTTTCTCTTTTTCTCTCTTTTTCCT
TCCCCTCTCTTTTCCTCCCTCTCTGTTCTTCCCCTTTCTTTTCTCCTTTC
TCTTCGTGCTCGTCCCTTCTCCTTCGCTTCTTTTTTTTTTCTTCTTTGTC
TTTTCTGCCCTCTCGCTTCCTGTCTCCCTTTTTCTTCTTTCTCCTCCCTT
CTTTTCTTTTTTTTTTTTCCTCGCCCCCCCCCCGCCTTACTTTTTTTGTT
TTCCTCTTTCCCTCCCCCTCTCTTTCTTATTCTTCTCTCCCGCCCCCTTC
TTTTTTTTCTTTCTCCCCTTCCTTCTTTTTCTTTTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_i13.b1 MSMg01no397_i13.b1 CHROMAT_FILE:
MSMg01no397_i13.b1 PHD_FILE: MSMg01no397_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:00 2005
         (388 letters)



>mm_chr5_23297471_23298258
          Length = 788

 Score =  603 bits (312), Expect = e-177
 Identities = 336/344 (97%), Gaps = 1/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtgtacacacacagacacaaagtgtaaaacaaatgcataccatctgtctgctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acatgtgtacacacacagacacaaagtgtaaaacaaatgcataccatctgtctgctgctg 285

                                                                       
Query: 61  ggtattccttctctctcttctccttgctccagaaaacattcttttccctttgttctattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggtattccttctctctcttctccttgctccagaaaacattcttttccctttgttctattt 225

                                                                       
Query: 121 aatttacttgttttaaaatattttggtgctgagggtgtagctcagtgatagtgtgcttac 180
           ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aatttacatgaattaaaatattttggtgctgagggtgtagctcagtgatagtgtgcttac 165

                                                                       
Query: 181 ccaccctaagcaattacct-catttaattctcagttctacaaaaataatgaatcaataaa 239
           |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccaccctaagcaaaaacccacatttaattctcagttctacaaaaataatgaatcaataaa 105

                                                                       
Query: 240 gacacactgcccagcaacatggctcagcaggtaaaggcactttccatcacggctgatgtc 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gacacactggccagcaacatggctcagcaggtaaaggcactttccatcacggctgatgtc 45

                                                       
Query: 300 ctaagtctgagctcaagacacacatggtggaagaccagagctaa 343
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  ctaagtctgagctcaagacacacatggtggaagaccagagctaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)