BAC Information

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BAC

Clone NameMSMg01-397P08
Chromosome5 (Build37)
Map Location 38,083,806 - 38,083,977
singlet/doubletsinglet
Overlap geneStk32b
Upstream geneLOC100040278, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988
Downstream geneCytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397P08.T7 (MSMg01no397_p08.b1)MSMg01-397P08.TJ (MSMg01no397_p08.g1)
ACCAG498175AG498176
length788836
length of high quality
(start - end)
242 (68 - 309)172 (72 - 243)
definitionCHROMAT_FILE: MSMg01no397_p08.b1 PHD_FILE: MSMg01no397_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:33 2005CHROMAT_FILE: MSMg01no397_p08.g1 PHD_FILE: MSMg01no397_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTTGGGCGCTAAACGAANCCTAAATCGTCATCTCGGCGGAANCAA
GCATTTTTCAATAAAACTTCCTTCTTGTTTAATTTCTTAGGGTCTGTGGG
GTGTATCATGATTACCCTCCAATGTCTATTTTATTTTCCCTTCTGGGTGA
GATTCAAGCATCCTCCCTTGGGCCCTCCTTGTTATTTGGCTTCTTTGGGT
CTGTGCTTCATTTACACTATGGAACACTACTACTCAGCTATTATATTCTA
GGACATCATGAAATTCACAGGCAAATGGATAGAACTAGAAAATATCATCC
TGGGTGAGGTTTTCCAGACTTTAAGGACATGCATAGCATGTGCTCACTTA
TAAGTAGATATTAGCTAAAGAAATATACGGGATAAACATGCAAATCATTC
TTTCCATGCCACCCACTTTAATACTTGTTCTTTCTCTCCTGCACGCCGTC
ACAGTCTCTGTGACATATGTGCAGTTTCCCTGCTCTGTCTGAAATATTCT
CTTCTTGTATTCATCTACCTTCCTGTCACCTGTTCTCTCTTGGCCTCCTG
TTCTGATGTGATCACTGAATTTCCTGTATGATGTACTGTGATTCTAACAT
CCCCTCTATTCCTGTCTCTTTCTTTCCCCTCCCCCTTCACCCTCCCGCCT
TTGTCCTTTCTTTCCCTCTCCCTCCCTCTTTTCTTTCTCCACTCTTTTCT
CTCCTCCCTTATGTCTCACTTACCATTTCTATCGATCACCCACAGCTACC
TCCACTTATCATCCCCTCCTCTTTCCCACCCCTCTCCG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTAACGAGACTTCAGAATCATTTTCATACACCCAGTATGGAAG
CATGGGGATAAACCCCGCCACACAATCCAGGGACGCAGTGCCACTTTAGA
GTGCTGACTAGCCTCCCTGCTCATGTTGGCGTTTGTTGACTATTAAGTGC
TGACTATTCATGCAGTTGATCTGTGGTGACATCACAAGCGTTTTGTTTTT
TACCAGCTAACACTGCGGCAAGTGTCCTCAAAAGATGCCACGTTGCAAGC
TGATGAGCTGTATTTCAGTTGNTTTTCAGGCCACAAGANACGCACGACGA
NAAGCTCTTTTTCCCCCCCGTCACAGTTACCCGGCCTTTATTATGTTATT
TATTTTTATCTGTCCCCCCCCCCCTTTTTTTTTTTCTCTTCCTCTCTGTT
CTCTTTCTTTATATCTACGCCCTCTCCTTCTCCCTTATTTATCTTTACCC
TTCCTTCTTACCATACTTTCTTCTTTTCTTTCTACCTTCCTCTTTTCCCC
TTCTCCCCCTTCTCTCTCATTCTTTCCCCCCCCCTCTTACTTTCTCATTT
TTTCCTTCTTTCTTTCCCCCGCCTTTTATCCCCTCTTTACTCCCCATTAT
TTCCCTTTTTTTCACTAGTACTCTTTTTCCTGTCCCTTCTTTTTTTATTT
CCTTTTTCCTCTCTTCTCACCGTCTTCTCCCGATAACTTTCTCTTTTTTT
CCCTATAAACTCACAACTCCATCTTTCCTATATTTTCTCCTACGCTCCAT
TATTTTTTGCTCTTCCTTTTATTTTCTCCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_p08.g1 MSMg01no397_p08.g1 CHROMAT_FILE:
MSMg01no397_p08.g1 PHD_FILE: MSMg01no397_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:33 2005
         (172 letters)



>mm_chr5_38083606_38084177
          Length = 572

 Score =  279 bits (144), Expect = 9e-80
 Identities = 165/172 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatcattttcatacacccagtatggaagcatggggataaaccccgccacacaatccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 372 gaatcattttcatacacccagtatggaagcatggggataaaccccgttacacaatccagg 313

                                                                       
Query: 61  gacgcagtgccactttagagtgctgactagcctccctgctcatgttggcgtttgttgact 120
           || |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 312 gatgcagtgccactttaaagtgctgacaagcctccctgctcatgttgacgtttgttgact 253

                                                               
Query: 121 attaagtgctgactattcatgcagttgatctgtggtgacatcacaagcgttt 172
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttaagtgctgactattcatgcagttgatctgtggtgacatcacaagcgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)