BAC Information

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BAC

Clone NameMSMg01-398D07
Chromosome5 (Build37)
Map Location 90,232,981 - 90,233,369
singlet/doubletsinglet
Overlap geneAdamts3
Upstream geneMkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398D07.T7 (MSMg01no398_d07.b1)MSMg01-398D07.TJ (MSMg01no398_d07.g1)
ACCAG498364AG498365
length774767
length of high quality
(start - end)
484 (39 - 522)243 (73 - 315)
definitionCHROMAT_FILE: MSMg01no398_d07.b1 PHD_FILE: MSMg01no398_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:52 2005CHROMAT_FILE: MSMg01no398_d07.g1 PHD_FILE: MSMg01no398_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATT
CCAAGCCCATTGCCTTGCTAAGGACGAACTAGGACTGTTGGAACACTGGC
GGACGGCTTTAGCTATGTCAGAATTCAATCTTAAAAAGCACTTATGATAG
GAAAATATTGAAAGAGAGCACGTGGATCCATACACTAGACTAGCGCGGGA
ATGGAATGCGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTAGACTC
CAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTTAAG
CCTCTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCATAAAGTGAG
CATGACACAGTAAATTTTCAATAAATATTAGCTGTTTTTTAATGGCATGT
ACATGGCATTACTAGCAAGAACCAGGAGGTGTCATGATTATTTCTCTGAC
TAACTACTTCTGCTAGAATCTGAAATGTTATTTTTTTGTATCAAAGCAGG
GTGACTTCTCAGCCTCTCCCCTAGACAGACTACTCCCTATTTATTGGTGA
GAGCAGTGAAATATCAGATAGAGTCTGACCTTGTGATCATATTAATTACA
CCAGTTTACTCCCAGGATGGCTTGCTTTTACACACCCTCTCTTACCCATT
CTGTATTCCTCACATTTGTGTGTGCTAACCCTGAATTGACCCAATTCCGG
ATATGTTCAATTACAATGATCCATAGAAAGCCTTTTCCCTCAATTTTTTT
TCCCTATTGTTTTAACCTTCTTTN
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGAAAATCTTTAATTTCTTTCTTTATT
TCTTCCCTGACCAAGTTATCATTGAGTAAAGTGTTGTTCAGTTTCAATGA
GTATATGGGCTTTCTGTTGTATCTGTTGTTCTTGAAGTACAGCCTTAATC
CTCAGTGATCTAATAAGAGTCAAGGGGTTATTTCAGTCTTCTTTTATCTG
TTGAGGTTTTCTTTGTGCCCAGTTATGTGGTCAATTTTGGAGAACATACT
GTGAGGTGCTGAGAATTTAGTACATTCTTTTGTTTTGGGCTGAACACTTC
TGTAGATATCTGTTAAATCCATTTGGTTCATAACATCTGTTAGTTCCATT
GTTTCTTTGTTTATTTCCTATTTTGATGACCTATCTATTGGCGAGAATGC
GGTGTTAAAGTCACCCACTATTATTGTGTGAGGTTCAATGTGTGATTTGA
GCTTTATTACAGTTTTTTTGATGATTGTGTCTGCTCTTGCATTCGCTATA
TATATTTCCTTTATTGATATGTTATCTTGTTGGATTTTTCTCATTTAGCT
ATTTCTATCTTTCTTCTTTCTTTTATTACTTTTTGGTACCAATATTTCTT
TTATTTTTTTTCTCCTTGTTTTTTCTTATTTGTCTCTCTTTCCTCCTCAC
TTTTTTTTTTTTTTTTTTCTCTCTCCTTTTTTTTTTCTCACTTTCACCCC
TTTATTTTTCATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_d07.b1 MSMg01no398_d07.b1 CHROMAT_FILE:
MSMg01no398_d07.b1 PHD_FILE: MSMg01no398_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:52 2005
         (484 letters)



>mm_chr5_90232686_90233569
          Length = 884

 Score =  739 bits (382), Expect = 0.0
 Identities = 388/390 (99%), Gaps = 1/390 (0%)
 Strand = Plus / Plus

                                                                       
Query: 95  aaaaagcacttatgataggaaaatattgaaagagagcacgtggatccatacactagacta 154
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaaaa-cacttatgataggaaaatattgaaagagagcacgtggatccatacactagacta 354

                                                                       
Query: 155 gcgcgggaatggaatgcgggaatgaaaaattactgtatgggtagggaacgctagactcca 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcgcgggaatggaatgcgggaatgaaaaattactgtatgggtagggaacgctagactcca 414

                                                                       
Query: 215 ggaggagagcttccttgaaactcttttgcctcatgagtgacttttaagcctctcggcttg 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggaggagagcttccttgaaactcttttgcctcatgagtgacttttaagcctctcggcttg 474

                                                                       
Query: 275 tccagttgactcgaccagagagcgtagcataaagtgagcatgacacagtaaattttcaat 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tccagttgactcgaccagagagcgtagcataaagtgagcatgacacagtaaattttcaat 534

                                                                       
Query: 335 aaatattagctgttttttaatggcatgtacatggcattactagcaagaaccaggaggtgt 394
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 535 aaatattagctgttttttaatggcatgtacatggcattactagtaagaaccaggaggtgt 594

                                                                       
Query: 395 catgattatttctctgactaactacttctgctagaatctgaaatgttatttttttgtatc 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 catgattatttctctgactaactacttctgctagaatctgaaatgttatttttttgtatc 654

                                         
Query: 455 aaagcagggtgacttctcagcctctcccct 484
           ||||||||||||||||||||||||||||||
Sbjct: 655 aaagcagggtgacttctcagcctctcccct 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)