BAC Information

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BAC

Clone NameMSMg01-398G09
Chromosome5 (Build37)
Map Location 87,153,747 - 87,154,071
singlet/doubletsinglet
Overlap geneTmprss11e
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398G09.T7 (MSMg01no398_g09.b1)MSMg01-398G09.TJ (MSMg01no398_g09.g1)
ACCAG498509AG498510
length768775
length of high quality
(start - end)
533 (67 - 599)242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no398_g09.b1 PHD_FILE: MSMg01no398_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:07 2005CHROMAT_FILE: MSMg01no398_g09.g1 PHD_FILE: MSMg01no398_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAATTTGCAATTTAGAGAGCTAGAATTGCCACCTGGAATAACCTT
CCAAAGACAATAAGTATGTTCACTGAGCTCCTTTGTCACAGACCTTATTT
TTGCCCACTGGGCTTAGGGGATGTCTTGTCTGCTTCTTATCCACTGTGCC
CTGTTTCTGCTGCCAATTCACACAACCTGCTTTGTTGACCTACTGTAGAG
TTAATGTAGTATAGTTTCCCCATTTTGCATACAAAAGAGTCAGACTTGTG
TCTACCTTCAGTGGATATTAATGCCTACCACATTTCTGTGATAGACATTG
TGCCAATCCTTATAAATATAATAATAACCTAAGACCATTGAAAAATTCCT
AGCCAAATAGATTGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
AAAACCTAGTATACCCAAGATATAAGATACAATTTCCTATACACATGANA
CTCAAGAAAAATGAAGGCTGAAGTGTGGACACTATACCCCTCCTTAGAAG
TGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG
AGAAGAATGGATGGACCATGTAGAGACTGGCCTTATCCACGGATCCCCCC
TTATTCATTATCCGAAAGCTGAACCCCTGGCTACCTCTACTAGATTTTTT
CTCACGGACCCCCACGTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTAAGA
AGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGATAAATGTAAATC
AATACAACCCTGAAATTCCATCTCACACCAGTCACAATAGCTAAGATCAA
AAATTCAGGTGACAGCACATGCTGACGAGGATTTGGAGAAAGAGGATCAC
TCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACCACTCTGGAAGTCA
ATCTGGCGGTTCCTTTTTTTATTGGACATAGTACTACTGGAGGATCCTGC
AATACCTCTCCTGGGCATACATCCAGAAGATGTCCCAACCGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAATAGAGGAATGGATACAAAAAATGTG
GTCCATTTACACAATGGAGTACTACTCAGCTATTTTTTTTATTTTTTTAT
TACATATTTTCCCTCATTACATTTCCAATGCTATCCTAAAAGTCCCCCAT
ACCCTTTCCCCCCCACTTCCCTACCCACTCCATCCCATTTTTTTTTTTTT
TTGGCCCGGACTCTCCCCGGACTGGGGCAAAATATACTCTGTGGGTTCCA
GGGGTTTCTCCTTTCTCGGCCTCTTTAAATTGTCCTTTGCACCAACTGGT
ATCTCTTCCTTAACAATTTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_g09.b1 MSMg01no398_g09.b1 CHROMAT_FILE:
MSMg01no398_g09.b1 PHD_FILE: MSMg01no398_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:07 2005
         (533 letters)



>mm_chr5_87153547_87154481
          Length = 935

 Score =  569 bits (294), Expect = e-166
 Identities = 319/332 (96%), Gaps = 9/332 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagagagctagaattgccacctggaataaccttccaaagacaataagtatgttcactga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttagagagctagaattgccacctggaataaccttccaaagacaataagtatgttcactaa 260

                                                                       
Query: 61  gctcctttgtcacagaccttatttttgcccactgggcttaggggatgtcttgtctgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcctttgtcacagaccttatttttgcccactgggcttaggggatgtcttgtctgcttc 320

                                                                       
Query: 121 ttatccactgtgccctgtttctgctgccaattcacacaacctgctttgttgacctactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatccactgtgccctgtttctgctgccaattcacacaacctgctttgttgacctactgt 380

                                                                       
Query: 181 agagttaatgtagtatagtttccccattttgcatacaaaagagtcaga--cttgtgtcta 238
           ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||
Sbjct: 381 agagttaatgtagtatagttttcccattttgcatacaaaagagtcagagacttgtgtcta 440

                                                                       
Query: 239 ccttcagtggatattaatgcctaccacatttctgtgatagacattgtgccaatccttata 298
           ||||||||       ||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttcagt-------aatgcctattacatttctgtgatagacattgtgccaatccttata 493

                                           
Query: 299 aatataataataacctaagaccattgaaaaat 330
           ||||||||||||||||||||||||||||||||
Sbjct: 494 aatataataataacctaagaccattgaaaaat 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 935
Length adjustment: 10
Effective length of query: 523
Effective length of database: 925
Effective search space:   483775
Effective search space used:   483775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)