Query= MSMg01no398_j10.b1 MSMg01no398_j10.b1 CHROMAT_FILE:
MSMg01no398_j10.b1 PHD_FILE: MSMg01no398_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:22 2005
(342 letters)
>mm_chr5_82271700_82272441
Length = 742
Score = 571 bits (295), Expect = e-167
Identities = 313/319 (98%), Gaps = 1/319 (0%)
Strand = Plus / Minus
Query: 17 catagtacaaatgatgtgaattgttctatacagtaaatattcagagtttcttcattctgt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 catagtacaaatgatgtgaattgttctatacagtaaatattcagagtttcttcattctgt 683
Query: 77 gtgaacaaaactgtatactctttgaataatctatcttga-tttttttctccctctttggc 135
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 682 gtgaacaaaactgtatactctttgaataatctatcttgattttttttctccctctttggc 623
Query: 136 tcttaggaacagttattctactcctattttaatttgagtttatcatataaagtgatcgtc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcttaggaacagttattctactcctattttaatttgagtttatcatataaagtgatcgtc 563
Query: 196 tggtatttgtcttttgcttgtcttatttattgtacttactgtgtgtttactctttttgtt 255
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct: 562 tggtatttgtcttttgcttgtcttatttattgtacttactgtgtgtttacacatgtagtt 503
Query: 256 gctaataataatattttattcttaaaaaggtaattaatgacaattcacagtgtgaatgtg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctaataataatattttattcttaaaaaggtaattaatgacaattcacagtgtgaatgtg 443
Query: 316 tgtatatatatatatatat 334
||| |||||||||||||||
Sbjct: 442 tgtgtatatatatatatat 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_j10.g1 MSMg01no398_j10.g1 CHROMAT_FILE:
MSMg01no398_j10.g1 PHD_FILE: MSMg01no398_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:22 2005
(244 letters)
>mm_chr5_82227643_82228285
Length = 643
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 tcagttaaatttcgtgagcatccttctttgtttttaacagtaaatttgaacacatgggaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttacatttcgtgagcatccttctttgtttttaacagtaaatttgaacacatgggaa 260
Query: 61 ataaatactagaatactcttagtgagtaaaattaattggcaagagaataatcacaattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaatactagaatactcttagtgagtaaaattaattggcaagagaataatcacaattat 320
Query: 121 attaaaataaaaataaacagcaaaagcaaaggcagctaattaagttaatcataatttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaaaataaaaataaacagcaaaagcaaaggcagctaattaagttaatcataatttcct 380
Query: 181 ataaaaaaaaacccatggtggttccaaattaaaacacagtttatgatctatgctgttttt 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaaaaaa-cccatggtggttccaaattaaaacacagtttatgatctatgctgttttt 439
Query: 241 aaga 244
||||
Sbjct: 440 aaga 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
