BAC Information

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BAC

Clone NameMSMg01-399B05
Chromosome5 (Build37)
Map Location 86,549,116 - 86,549,368
singlet/doubletsinglet
Overlap geneUbe1l2
Upstream geneCenpc1, LOC100039521, AI586015
Downstream geneGnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399B05.T7 (MSMg01no399_b05.b1)MSMg01-399B05.TJ (MSMg01no399_b05.g1)
ACCAG499028AG499029
length701737
length of high quality
(start - end)
515 (42 - 556)253 (87 - 339)
definitionCHROMAT_FILE: MSMg01no399_b05.b1 PHD_FILE: MSMg01no399_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:59 2005CHROMAT_FILE: MSMg01no399_b05.g1 PHD_FILE: MSMg01no399_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGATCCGCGGA
ATTCATGATTTCCTTAGGCAAATGGATAGAACCAGAAAATATCACCCTGA
GTGGGGTAACCCAATCATAAAAGAACACATATGATATGCACTCACTTGTA
AGTAGGTATTAGCCCAAAAGCTACAAATACCCAAGATACAATCCACAGAC
TACATGAATTCAAGAAGAAGGAAGACCAAAGTGTAGGTGCTTCTGCCCTT
CTTAGAAAGGGGAACAAAATACTCATAGCAGCAAATATAGAGACAAAGTG
TAGATCAGAGACTGAAGGAAAGGCCATCCATCCAGTGACTGTCCCACCTG
GCGATTCATCCCATATACAGTCACCAAAACCTGACACTGTTGTAGATGCC
AGGAAATGCTTCCTGACAGGAGCTTGATATAGCTGTCTCCTGAGAGGCCC
TGCCAGAGCCTGACAAATACAGAGGCGAATGCTCATAGCCAACCATTGGA
CTGAGCACAGGGTCCCCAATGAAGGAGCTAGAGAAAGGACTGAAGGAGCT
AAAGGGGCTTGCAGCCCCATAGGAATAACAATATCAACCAACCATTAACC
CCATAGCTCCCAAGGACTAAGCCACCAACCAAGGCTCCAGCTGCATATGT
AGCANAGGATGTAGTATATGATGCCCCCGTCCGGCCTCCTTGGTAGAGGC
N
CCTCTTCTTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGCAGTTGAT
TTGCCACACCACTTAGCATTATACTTGGTTCCTAACTTAGATAATTTTAA
AACCATTCTTGTCTGGTTATAGTCCTGTCTAACTGTGAAACTTACAATGT
AATCCTATACATTTATTACAACAGAAAACAATTCCTTGAGGTTTTGTTTT
TGACATTTCAGGTTGAACACAGCCAGAAATGCCAGTAGAAGAATCTTATC
AGGAAGAGCTAATCCATATTATGCTCTTACTTTACTTACAACAACAGAAA
ATACTGTTATCCATTCAAAGTATAGTGAGCCGCTATGCCTCTGACTTTTA
CTTAATTTTCGCATACATGTCCAAGTCACATATAAGCCAAGATAATTCTT
GTATCATGCTTATGACTTGCATCGTTTCGATTTCTTATACTCGCCAATTA
TCAATGTTTATCATACCGCTCTTTCGAATCTTTTTTACTACTTTTCTCCA
TTGCCATTTTTGTATGTATCCACTTACCCCTTCTTTTCTTTTTGATACTA
CTGATTCTCCTTTATGCCCTATCCTTTTCACCTTCTATTTCGCCGTTCTT
ATTTGTCCCACTTCTTCTTTTGTTTTCTATCGTCCATTTTTCCCTATCTT
TTCTTTTATTTCTTTCGTTCTCCCCTTTCTATTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_b05.g1 MSMg01no399_b05.g1 CHROMAT_FILE:
MSMg01no399_b05.g1 PHD_FILE: MSMg01no399_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:00 2005
         (253 letters)



>mm_chr5_86548916_86549568
          Length = 653

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagcagttgatttgccacaccacttagcattatacttggttcctaacttagataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcagagcagttgatttgccacaccacttagcattatacttggttcctaacttagataatt 394

                                                                       
Query: 61  ttaaaaccattcttgtctggttatagtcctgtctaactgtgaaacttacaatgtaatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttaaaaccattcttgtctggttatagtcctgtctaactgtgaaacttacaatgtaatcct 334

                                                                       
Query: 121 atacatttattacaacagaaaacaattccttgaggttttgtttttgacatttcaggttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atacatttattacaacagaaaacaattccttgaggttttgtttttgacatttcaggttga 274

                                                                       
Query: 181 acacagccagaaatgccagtagaagaatcttatcaggaagagctaatccatattatgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acacagccagaaatgccagtagaagaatcttatcaggaagagctaatccatattatgctc 214

                        
Query: 241 ttactttacttac 253
            ||| ||||||||
Sbjct: 213 atacattacttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)