Query= MSMg01no399_b21.b1 MSMg01no399_b21.b1 CHROMAT_FILE:
MSMg01no399_b21.b1 PHD_FILE: MSMg01no399_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:03 2005
(244 letters)
>mm_chr5_89042679_89043323
Length = 645
Score = 400 bits (207), Expect = e-116
Identities = 232/245 (94%), Gaps = 10/245 (4%)
Strand = Plus / Minus
Query: 1 aatggactctgattaaggatatgttaataatcccttcccccccacccctcaagctgtttt 60
||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 541 aatggactctgattaaggatatgttaataatcc---ccccccc------caagctgtttt 491
Query: 61 tggtcagtgtgtttcagagcagcaatagtaaccctaactaaggcaatcactattagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tggtcagtgtgtttcagagcagcaatagtaaccctaactaaggcaatcactattagttca 431
Query: 121 taataagttactggtataaagtggcataagaaatttaactcccatgttttcaacactcat 180
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 430 tagtaagttactggtataaagtggcataagaaatttaactcccacgttttcaacactcag 371
Query: 181 cccacaaagtctggctctcagtactgtttgagaagaggg-ctcaggaccatattctctgt 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 370 cccacaaagtctggctctcagtactgtttgagaagagggtctcaggaccatattctctgt 311
Query: 240 gacag 244
|||||
Sbjct: 310 gacag 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no399_b21.g1 MSMg01no399_b21.g1 CHROMAT_FILE:
MSMg01no399_b21.g1 PHD_FILE: MSMg01no399_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:03 2005
(433 letters)
>mm_chr5_88855815_88856647
Length = 833
Score = 814 bits (421), Expect = 0.0
Identities = 430/433 (99%)
Strand = Plus / Plus
Query: 1 ttgagaggaataaagaaggaaggtgcaaggtatagtctgaagtgagagtttactagacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagaggaataaagaaggaaggtgcaaggtatagtctgaagtgagagtttactagacat 260
Query: 61 tctcccccaccctgttctaggctggattttattacatcctggataagtacagcacaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcccccaccctgttctaggctggattttattacatcctggataagtacagcacaacca 320
Query: 121 gtcagagataaatacatcctgcttgcctacaaagcaagcaaatgtgcttctctcggtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagagataaatacatcctgcttgcctacaaagcaagcaaatgtgcttctctcggtctg 380
Query: 181 tatttcctctgttattttgtttgcagttttgtggtctctgcaattctgtgcttcagcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttcctctgttattttgtttgcagttttgtggtctctgcaattctgtgcttcagcctt 440
Query: 241 aaatgctgagatgacagaaggcatgcaacagggtctagataagtaattcttcctgccacc 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 441 aaatgctgagatgacagaaggcaagcaacagggtctagataagtaattcttcctgccatc 500
Query: 301 ttctgagagttcttttctccacccatcatttggtcatctggacatttttacaatatccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgagagttcttttctccacccatcatttggtcatctggacatttttacaatatccac 560
Query: 361 cgagcattatcatgtaccttgtacaattcagaaactcttatgtccacctgggatttgatg 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 cgagcattatcatgtaccttgtacaattcagaaactcttaagtccacctgggatttgatg 620
Query: 421 ttcaagaaattgg 433
|||||||||||||
Sbjct: 621 ttcaagaaattgg 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
