BAC Information

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BAC

Clone NameMSMg01-399J11
Chromosome5 (Build37)
Map Location 122,544,380 - 122,544,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693
Downstream geneMyl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399J11.T7 (MSMg01no399_j11.b1)MSMg01-399J11.TJ (MSMg01no399_j11.g1)
ACCAG499418AG499419
length735752
length of high quality
(start - end)
339 (74 - 412)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no399_j11.b1 PHD_FILE: MSMg01no399_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:39 2005CHROMAT_FILE: MSMg01no399_j11.g1 PHD_FILE: MSMg01no399_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGAGCGAAATCCGC
GGAATTCATACATTTCTACACACACACACACACACACATACATACACACA
TATATATATATATACATACACACATACATACATGCATATGTACATACACA
CATACATATATACATACATACACACATATATACATACATACACAATATAC
ATACACACATTTATACATACACACATATATATATATAAATACATTTATAC
ATACATACACACATTTATACATACACACATATATACATACATACATACAT
CACACATATATACATACATACACACGTATATACATACATACGACAGTGAG
GATGAGCTTCAGAAACCCTTGTAGAGAAAGAAGCCAGGGCTCTCAGGATG
GCTCAGTGGGCAAACCCCCCTACAGCTAGGCCAGACCATCTGTCTCAATA
CCCTGAAATCCAAATGGTGGAGGGAGGGAATCCGTTCCTGAAGGCAGACT
TCCAACTTTACACGTGCTCCAGGGCACACACTCCCATTCAAGCATACGAC
AGATAAGTAATAAACAATAAATCTTTTTTTTTTTTGCTTTTTGTTTTTTG
CTCTTCGAGACAGAGCTTCTCTGTGTAGCCCTGGCTGTCCTGCAACTCAC
TCTGTAGACCAAGCTGGCCTGCAACTCATATATCCACCTGCCTCTGCCTC
CTAGTGCTGGGATAAAAGCGTGCATCATTTCTCCC
TCTCCGATGACAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTTCAGCGAAATTCAGTGTGGCACTTCTAGGTCC
AGCCTGCGCTGGGTGTAAGAGCTGACCTGACTGAACACAGCTGAGCCGAG
GAGCCTTCCAGAATGTTCAAGGTAGTCCTGCATGCCCATCTTCCATGGAG
CACAAAGCCATGGTGCCTGCCATAGCAGCACTCAGCACCCAGTGGCTCCC
AGAAGGAGGTCTACCTCCCCTGACTCCCTCTGGCTAGCTTGAGTGGCTGC
CACTCCCAGGGGCAGCTGTCACCTTTTCCTTCCGAATCTTGACAGGAGGA
GATACGTTATCCTTGGTGACAGCATCCATCAGCCACATTCTAGAATGGCA
TTTACTTCTACTATATTTCCACTTCATCACCCGGTATGTAAGGTATACTG
GCCATGGTAAGGCCACCTCCATAATAGACTATTGAGATCACGTTTGTGTC
TCCCCTCATTTTGTTTCCGCCTTCCACAGCACATTCTCTACCCTTTGTTC
TTCCCCCTGCTTATCGGCTTTTGCATTTTCTGCTGAGGACTTTTACACCT
TTTCTTTTATTTCCTTCATTAGGTTGTCTCGTTTCCCGCCATTCGAGCCA
CACACAGTTCTTCCAGCTACTTGGCTCTGCATAATTGTTCCCTTCACAAA
CTACGATTTTAACATCTTTCCCCTCCCTTCTTCCTCCCGTTTCATTCTCC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_j11.g1 MSMg01no399_j11.g1 CHROMAT_FILE:
MSMg01no399_j11.g1 PHD_FILE: MSMg01no399_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:39 2005
         (288 letters)



>mm_chr5_122544187_122544874
          Length = 688

 Score =  464 bits (240), Expect = e-135
 Identities = 278/300 (92%), Gaps = 17/300 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcagtgtggcacttctaggtccagcctgcgctgggtgtaagagctgacctgactgaac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 194 attcagtgtggcacttctaggtctagcctgcgctgggtgtaagagctgacctgactgaac 253

                                                                       
Query: 61  acagctgagccgaggagccttccagaatgttcaaggtagtcctgcatgcccatcttccat 120
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 254 acagctgagctgaggagccttccagaatgttcaaggtagtcctgcgtgcccatcttccat 313

                                                                       
Query: 121 ggagcacaaagccatggtgcctgccatagcagcactcagcacccag-------tggctcc 173
           |||||||||||||||||||||||||| |||||||||||||||||||       |||||||
Sbjct: 314 ggagcacaaagccatggtgcctgccagagcagcactcagcacccagcacccagtggctcc 373

                                                                       
Query: 174 cagaaggaggtctacctcccctgactccctctggctagcttgagtggctgccactcccag 233
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cggaaggaggtctacctcccctgactccctctggctagcttgagtggctgccactcccag 433

                                                                       
Query: 234 gggcagctgtcaccttttc-----cttccgaatcttgacaggaggagatacgttatcctt 288
           ||||||||||||     ||     ||||||||||||||||||||||||||||||||||||
Sbjct: 434 gggcagctgtca-----tcaacaccttccgaatcttgacaggaggagatacgttatcctt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)