BAC Information

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BAC

Clone NameMSMg01-401D14
Chromosome5 (Build37)
Map Location 136,898,092 - 136,898,371
singlet/doubletsinglet
Overlap geneCutl1
Upstream geneHip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2
Downstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401D14.T7 (MSMg01no401_d14.b1)MSMg01-401D14.TJ (MSMg01no401_d14.g1)
ACCAG500660AG500661
length794736
length of high quality
(start - end)
293 (74 - 366)274 (326 - 599)
definitionCHROMAT_FILE: MSMg01no401_d14.b1 PHD_FILE: MSMg01no401_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:48 2005CHROMAT_FILE: MSMg01no401_d14.g1 PHD_FILE: MSMg01no401_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACTTAGTCCTCATGTCGCTAAANGANNCACTTTTTCAACAAATCCGC
GGAATTCAAGAGTTTCCACTGCCTCCACCTCCTGAAGGCTGGGATTAACG
GTGTGCACCACCGTGTTCAGTTACTTATTTTCATAGCAACAAAATCTAAG
ATTAGTCTGTAACTTAGCTAGCAACTGAAACATATTCCATTTTTGTTTGT
GTTGGGATTTTTTTTTATGGTTTTAGAGCTTTATTGTAGAAAGTCAGGGG
GAAAGAGAGAAGGTAGAAAGAGAGAGGGAGAGGCCCGCCATGGCCATATG
GGATAAGGGGGGAAGAGAATGATGTTAGAGGGGCTAGAGAGTTAGAAAGG
TGAGAGCTTAAAGAGGCGTGCTGGGATTTTGTTTGTTCGCCATCCTTCCT
CCCCTTATTTTTCACCCTCCTACTTTTCCTCTTTTTTTCCCATATATCTT
TTCCCTTTTCCCTCTTTTTTCTTTTTCATTTTTTATTTTTCTCCCTTTTC
CCTCTTCTTTTTCTTCCTCTCCTTTTTCTTTCTATTTCTTCCTACTCTTA
CCCCTTTATTCCTTTCTCTCCCCCTTCTCTCTTTTCCTTCCTTTTTTCTC
CCCTCTTATTCCTCTTTTTTTTTTTCCTCTCNTTCCCGCCTTTTTTCTTC
CCCTTTTTCTTCTTCCTCCTTTCGCCCTTCCTCCCCCTCATTTTCCTTTT
TTTTTCTATAACGTCCGTCTATCCCTTCCCCTTATCTTTTCCTTCCTCTC
TCTCCTCCCTCCTTTTTTTTACCCTTTCTCTTTACCTTTCCTGT
TCCACGATGATGNTGGTGGCCTGGCGGNCGCCTGTTCACAAATTTAGGNG
ACCTATAGAAGTACCGCGAAATTCCTCTTGCTATCTCTTCTGTGCCTCTT
AAGTAAGAGTAGGCTTCAGGCAGCCTTGAGATTCACTCTTGAATATTCGG
CCTGGCGTCTGTGCAGTCACTCAGTAGAAGGCTTCAGTCTGCTGTCCAGA
GCCGCCTGACTGGCTGGATGAGTCATACAGAAGTTCATAGATCTCAAAAG
CAGCTGCTCAGACTTTTCTGTTATTACCATATACAGCTAATATAGATCCA
TTTATCTCCAGCCATTGGNGTANGGAGTTTTAGCAATTCCATACCTATCA
TCTCTCTTGAGAATTTCTCCATCTACAACTCTGGCAAAAAGACTATACAC
CCAATCAGCCACAGGACCTAAAACCATCACCCTGGACTACAAAATGTTTG
CATGGCTAAGTATTTGAATGAGGTCAAAGTACAGGCTAACTTTACATTCC
GACAACATCAAAAGAGAACTGCACAGGACAATAAGGATTCCAAAACAATT
TCACCTGAGTAGTGCTTCCCCCACCCCTGCATTTTGTACTACATACTCGG
GAATGGNCTGAACAAATTGTGGTAGGTTGGAATTGATTTTGACATAGTCC
CTATTATTGATGATAATATTGTAAAGTTCTGACAAGCTGGCAGAATTATC
TTGGGAAAGGTTTAAGCTGACACAATGCTTCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_d14.g1 MSMg01no401_d14.g1 CHROMAT_FILE:
MSMg01no401_d14.g1 PHD_FILE: MSMg01no401_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:48 2005
         (274 letters)



>mm_chr5_136897892_136898565
          Length = 674

 Score =  491 bits (254), Expect = e-143
 Identities = 271/280 (96%), Gaps = 6/280 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttagcaattccatacctatcatctctcttgagaatttctccatctacaactctggc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttagcaactccatacctatcatctctcttgagaatttctccatctacaactctggc 260

                                                                       
Query: 61  aaaaagactatacacccaatcagccacaggacctaaaaccatcaccctggactacaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagactatacacccaatcagccacaggacctaaaaccatcaccctggactacaaaat 320

                                                                       
Query: 121 gtttgcatggctaagtatttgaatgaggtcaaagtacaggctaactttacattccgacaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 321 gtttgcatggctaagtatttgaataaggtcaaagtacaggctaactttacattccaacaa 380

                                                                       
Query: 181 catcaaaagagaactgcacaggacaataaggattccaaaacaatttcacctgagtagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcaaaagagaactgcacaggacaataaggattccaaaacaatttcacctgagtagtgc 440

                                                   
Query: 241 ttcccccacccc------tgcattttgtactacatactcg 274
           ||||||||||||      ||||||||||||||||||||||
Sbjct: 441 ttcccccacccccacccctgcattttgtactacatactcg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)