Query= MSMg01no401_f10.b1 MSMg01no401_f10.b1 CHROMAT_FILE:
MSMg01no401_f10.b1 PHD_FILE: MSMg01no401_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:56 2005
(523 letters)
>mm_chr5_44395680_44396599
Length = 920
Score = 922 bits (477), Expect = 0.0
Identities = 511/525 (97%), Gaps = 7/525 (1%)
Strand = Plus / Minus
Query: 1 gacttatggcatgattttttttttttttttgagcctgagtcagtgaacgcttccttgttg 60
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 610 gacttatggcatga---tttttttttttttgagcccgagtcagtgaacgcttccttgttg 554
Query: 61 tttcctgtcccacagatcacagagaagatgacatcttgcaaacccatggccaccgcgatg 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 553 tttcctgtcccacagatcacagagaagatgacatcctgcaaacccatggccaccgcgatg 494
Query: 121 gactctgctgttaatggcattctgtgtggctatgttgcggaccctctggtaagaacttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gactctgctgttaatggcattctgtgtggctatgttgcggaccctctggtaagaacttca 434
Query: 181 tctttcaaaaagagaagacatattaattaaacatgttctccccacaaaccccatccccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 433 tctttcaaaaagagaagacatattaattaaacatgttctccccacaaaccccacccccca 374
Query: 241 ccccatattgggttgttagttttcgacgtgtctaaccttgttctgagaggtttacagctt 300
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccccatattgtgttggtagttttcgacgtgtctaaccttgttctgagaggtttacagctt 314
Query: 301 tatgacaaagctgttcttctgaagattaggggccaaaggtaatgccaccattatcctccc 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 tatgacaaagctgttcttctgaagattaggggccaaaggtaaagccaccattatcctccc 254
Query: 361 ttgtctcatgcccttcagtctggttaccttccttttccaaactggtttttctttttcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttgtctcatgcccttcagtctggttaccttccttttccaaactggtttttctttttcttt 194
Query: 421 tttccttttagatttatttatcattatatctaagtacactgtagctgtcttcagatgca- 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 193 tttccttttagatttatttatcattatatctaagtacattgtagctgtcttcaga--cac 136
Query: 480 -ccagaagagggcatcagatctcattacagatggttgtgagccac 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cccagaagagggcatcagatctcattacagatggttgtgagccac 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 920
Length adjustment: 10
Effective length of query: 513
Effective length of database: 910
Effective search space: 466830
Effective search space used: 466830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_f10.g1 MSMg01no401_f10.g1 CHROMAT_FILE:
MSMg01no401_f10.g1 PHD_FILE: MSMg01no401_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:56 2005
(264 letters)
>mm_chr5_44217264_44217927
Length = 664
Score = 460 bits (238), Expect = e-134
Identities = 254/264 (96%), Gaps = 9/264 (3%)
Strand = Plus / Plus
Query: 1 gaagaacagatgaaaataaatgtcctccttgtctcccaggttttttgcagattttgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagaacagatgaaaataaatgtcctccttgtctcccaggttttttgcagattttgaaat 260
Query: 61 cccgtacttacaaaaggataaagtcacaagaatagagatctgggttatgcatgacgttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgtacttacaaaaggataaagtcacaagaatagagatctgggttatgcatgacgttgg 320
Query: 121 agggcccaatgtgtaagttttggggcttggggcggtagctgtgaggtcttgctttgcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcccaatgtgtaagttttggggcttggggcggtagctgtgaggtcttgctttgcttg 380
Query: 181 gatgtgatatgaccgtggcccctttgctctgagctttagagacctgccagcctctgattc 240
|||||||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct: 381 gatgtgatatgatcgtggcccctttgctctgagc---a------tgccagcctctgattc 431
Query: 241 taatgtgactggtgaggaaggaga 264
||||||||||||||||||||||||
Sbjct: 432 taatgtgactggtgaggaaggaga 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
