BAC Information

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BAC

Clone NameMSMg01-402C14
Chromosome5 (Build37)
Map Location 72,187,344 - 72,187,882
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402C14.T7 (MSMg01no402_c14.b1)MSMg01-402C14.TJ (MSMg01no402_c14.g1)
ACCAG501374AG501375
length727635
length of high quality
(start - end)		543 (50 - 592)---
definitionCHROMAT_FILE: MSMg01no402_c14.b1 PHD_FILE: MSMg01no402_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:58 2005CHROMAT_FILE: MSMg01no402_c14.g1 PHD_FILE: MSMg01no402_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTGTATGTAGCAATCAGAGATATGAAAAATAAAATAATGA
GATTCCATGGAATACCCACTATGCAGATGGAAATTATGAAGTCAGTATAA
TTAGAAAATTGTAACACATTCAGAATGAAGTATGTGAAGTCAGTTAAAAA
GACTTAGAGTTACCATATAGCAAAATGGGTAAATATCAGGAATTTAATGT
TGGAGAAATGTCAGAGAATTATAGGCAATGTATTTATACTTTGCACGGTA
CTTAAAAAGTTTCAAAGGAGCATATGCCTGTACTTTATACTATGAGCCTG
TGAATTAACATAATGAAACCATAAAAAATAAAAACAGGAAAATGCCTCAT
TTTTGGCTTGAGTAAGAAATATAGAAATGGATTCTGGGATATACAAGATC
CTTTAGGTTTATAATCATTTGTTTACTATAAAAATCCATAGTTGAATTCA
GAAAATTATTAGTTTTTAATAAAATTAGTAAGTTCTCTTTGTCCTTTAGC
CACTGTAATTCTCTCTGACAATAAAAATAGTTAAAGATTGGCTGGTTGGA
CAGTGCAGGAGGAGAGGGGCTGATCTCTGGAACCCATGTTGTGGAAAGAA
AATTGACTCGCAAAAGTAGTCCTCCTACCTCCACACAAGTGCTCTGTCAA
TGCATGCTCACACTCAAACCTTAATCT

TCTTTTTTTTTTTACTTTTCGAGAAGCGGTAXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCCGGAGGG
GGCCGAAAAAGAAATGGGAAAATTTTTTGCCTTTTGGGAAACGGGAAAAT
AATTTTTTTTTTTTTGGTAAAAAAATACCTCTTTCTTCCTTTTTTTGGGT
GGCCCCCTTCTCCCTTCCTCCCCCCCACCCACCCCCCTTTATTTTCTTTA
TTAATTCATCCCCCCCCCCCCCTCTTTCCTGCCTCTCCCTCCTTCTCTTT
TTAGCCCTTTTTCCTCTCCGAATCCACAATTTCCTCCCCCATTTTAAAAA
ACCTCCCCTTTTTACCACACATAAAACCTCTTTGGGCCTCTGTGGGGAAA
AAAACCCTTTTTTTCTTAAAAAAAAGAGAAAAAAAAAACCCCCCCCCCCA
AAAGGGGGGGCGCCCCCCCCCCCCCCCCCCCTGGGGTGGGGGGTTTCTTT
CCTCCCTTATAAATAAAAACTCCCCCCTCCTCTTTTGTGTCTTCCCCCCT
CACAAAAGCCCTCCCATCCTTTTCTCTTTTCTTTTTTTCCCCCCCCCACC
TTTCTCTTCTTTTTTTTTTTTTTATTATTAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_c14.b1 MSMg01no402_c14.b1 CHROMAT_FILE:
MSMg01no402_c14.b1 PHD_FILE: MSMg01no402_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:58 2005
         (543 letters)



>mm_chr5_72187140_72188082
          Length = 943

 Score =  965 bits (499), Expect = 0.0
 Identities = 529/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtatgtagcaatcagagatatgaaaaataaaataatgagattccatggaat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtaagtagcaatcagagatatgaaaaataaaataatgagattccatggaat 264

                                                                       
Query: 65  acccactatgcagatggaaattatgaagtcagtataattagaaaattgtaacacattcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccactatgcagatggaaattatgaagtcagtataattagaaaattgtaacacattcag 324

                                                                       
Query: 125 aatgaagtatgtgaagtcagttaaaaagacttagagttaccatatagcaaaatgggtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgaagtatgtgaagtcagttaaaaagacttagagttaccatatagcaaaatgggtaaa 384

                                                                       
Query: 185 tatcaggaatttaatgttggagaaatgtcagagaattataggcaatgtatttatactttg 244
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 385 tatcaggaatttaatgttggagaaatgtcatagaattataggcaatgcatttatactttg 444

                                                                       
Query: 245 cacggtacttaaaaagtttcaaaggagcatatgcctgtactttatactatgagcctgtga 304
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 cacagtacttaaaaagtttcaaaggaacatatgcctgtactttatactatgagcctgtga 504

                                                                       
Query: 305 attaacataatgaaaccataaaaaataaaaacaggaaaatgcctcatttttggcttgagt 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 attaacataatgaaaccataaaaaataaaaacagaaaaatgcctcatttttggcttgagt 564

                                                                       
Query: 365 aagaaatatagaaatggattctgggatatacaagatcctttaggtttataatcatttgtt 424
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagatatatagaaatggattttgggatatacaagatcctttaggtttataatcatttgtt 624

                                                                       
Query: 425 tactataaaaatccatagttgaattcagaaaattattagtttttaataaaattagtaagt 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tactataaaaatccgtagttgaattcagaaaattattagtttttaataaaattagtaagt 684

                                                                      
Query: 485 tctctttgtcctttagccactgtaattctctctgacaataaaaatagttaaagattggc 543
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 685 tctctttgtcctttagccactgtaattttctctgacaataaaaatagttaaagattggc 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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