TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCAAATCCGCGGAATT
CTTAGCATTTTCCTAGAAATCACTAAATCAAAAGTTGATAATGTTGCCAG
GAAGCACCTGAAGCTTATAGCAGTTTTCCCTGCTTTGCTGTAACCTACCT
ACATACCTTGTTTGATGGCAACTCTCTGTTATGTGACTGGAAAGGTCCAT
GTAACCATTTAGACAGCAGAATACTCAGGACAACCGCATCCATGTCACTG
GGTCAGAGACACTCATATGTGCTTCTTGTTTCTTGTGTTGTGAGGGTTTT
GCAACAACATCATGTTTTTTTCCTGTAAGTGGGCATGGGATGTACTTCCC
TGCCTGTCTCCTGTCTTCTGTCTCTTGTCAGTTCATTTCAGCAAACTTAG
ATGCAACTTTCTTATGGCTTTCCCGAGATGAATGAAAAAATCCTATTGGG
GGAGCACTCAGCACTCACAACAAACAAAACAGGAGCTTGCTGAGTATTTC
AATTTAAGTTTTGGCTCAGAACAACCCTGTGTACACTGTCCCACATCTGT
CTCTACTGAAGCTCTTTAGTTACTTCTCTTATCCTGTACAAAGACCTCTT
ATGCCCCGTCAAGTCTGTTTGTAGCCTTTAAATGTATGCCCAAATGTTTT
ATATTAATTTTAAAGCTGCATATAATCCCGATAAAGCTAGCTATAACAGT
AAACCCTTTCTTAGCTATTTACTGCTTAATAAAAAACAGTTAAAAATCCC
TTGAATCTCCTGCTTCAACA

ATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCTAACATTACAGGTTGTGCTGCAGAATCACCTTGTTGGGT
GAAAAAACATTTAGCTGCAGGCTCAGAATGGCACATGGCCAGGAGTGGGA
CACAGTGGTGGTTCATGTTCTGCCCTTTGCCTTTGGGTTAATAGACATTT
CTCCAACCCATCAACCTCTCCAGTGAGTTAGATTTATATATCTGTAATTA
GTTAGATTCTTTTGAAAGAAAAACTTGTACATGTATGTAGCATGTATGCT
ATGTGTATGCTATTTGTATTATGCTGATGTGTGTGTATGTGCATGTGCAC
ATGAGTGCATCTATGTATGTGCCACAGCACGTGCATAGAGCTTATACGAT
AGCTTCTGTTATTTCCCGCTTTTTATCCTGTTTGAGATAGACGTCTTGCT
GTTCGCTGCTGTGTATGGCAGTCCCCCAAGCTCCTGGTGATTCTCCTGTT
TGTCTCCCTCATCTCCAGGGGTATCTTAATCACGATTCTATTGCTGTGAA
TAGGCACCCTGAAAGTTTATATTTGCGACTTGCTTATTGTTCCTGCAGTT
TTCTCTCTTGCTTCCTGGTGGGTTAACATGCGCATTTTGCTGAAAAAATT
TTTTTTTGTTTTTTTTTGACACCTCCTTTTTCCTAATTCTCTCCTCCGCC
AATATTATCATACTGGTCCCTCGCCTCGTTTTTTTTTATATTCTCTTTTC
TCCTATTTCCTATCTCTTCTTTTCT

Query= MSMg01no402_f08.b1 MSMg01no402_f08.b1 CHROMAT_FILE:
MSMg01no402_f08.b1 PHD_FILE: MSMg01no402_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:11 2005
         (499 letters)



>mm_chr5_26928597_26929495
          Length = 899

 Score =  911 bits (471), Expect = 0.0
 Identities = 492/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactaaatcaaaagttgataatgttgccaggaagcacctgaagcttatagcagttttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cactaaatcaaaagttgataatgttgccaggaagcacctgaagcttatagcagttttccc 496

                                                                       
Query: 61  tgctttgctgtaacctacctacataccttgtttgatggcaactctctgttatgtgactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgctttgctgtaacctacctacataccttgtttgatggcaactctctgttatgtgactgg 436

                                                                       
Query: 121 aaaggtccatgtaaccatttagacagcagaatactcaggacaaccgcatccatgtcactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaggtccatgtaaccatttagacagcagaatactcaggacaaccgcatccatgtcactg 376

                                                                       
Query: 181 ggtcagagacactcatatgtgcttcttgtttcttgtgttgtgagggttttgcaacaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtcagagacactcatatgtgcttcttgtttcttgtgttgtgagggttttgcaacaacat 316

                                                                       
Query: 241 catgtttttttcctgtaagtgggcatgggatgtacttccctgcctgtctcctgtcttctg 300
           ||||  |   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 catgagtgagtcctgtaagtgggcatgggatgtacttccctgcctgtctcctgtcttctg 256

                                                                       
Query: 301 tctcttgtcagttcatttcagcaaacttagatgcaactttcttatggctttcccgagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tctcttgtcagttcatttcagcaaacttagatgcaactttcttatggctttcccgagatg 196

                                                                       
Query: 361 aatgaaaaaatcctattgggggagcactcagcactcacaacaaacaaaacaggagcttgc 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 195 aatgaaaaaatcctattgggggagcactcagcactcacaaaaaacaaaacaggagcttgc 136

                                                                       
Query: 421 tgagtatttcaatttaagttttggctcagaacaaccctgtgtacactgtcccacatctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgagtatttcaatttaagttttggctcagaacaaccctgtgtacactgtcccacatctgt 76

                              
Query: 481 ctctactgaagctctttag 499
           ||||||||| |||||||||
Sbjct: 75  ctctactgatgctctttag 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no402_f08.g1 MSMg01no402_f08.g1 CHROMAT_FILE:
MSMg01no402_f08.g1 PHD_FILE: MSMg01no402_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:11 2005
         (400 letters)



>mm_chr5_26725425_26726224
          Length = 800

 Score =  694 bits (359), Expect = 0.0
 Identities = 389/399 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtgctgcagaatcaccttgttgggtgaaaaaacatttagctgcaggctcagaatggcac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtgctgcagaatcaccttgttgggtgaaaaaacatttagctgcaggctcagaatggcac 261

                                                                       
Query: 62  atggccaggagtgggacacagtggtggttcatgttctgccctttgcctttgggttaatag 121
           |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 262 atggccaggagtgggacacagtggtcattcatgttctgtcctttgcctttgggttaatag 321

                                                                       
Query: 122 acatttctccaacccatcaacctctccagtgagttagatttatatatctgtaattagtta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatttctccaacccatcaacctctccagtgagttagatttatatatctgtaattagtta 381

                                                                       
Query: 182 gattcttttgaaagaaaaacttgtacatgtatgtagcatgtatgctatgtgtatgctatt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 382 gattcttttgaaagaaaaacttgtacatgtatgtagcatgtatgctatgtgtatgctaca 441

                                                                       
Query: 242 tgtattatgctgatgtgtgtgtatgtgcatgtgcacatgagtgcatctatgtatgtgcca 301
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 tgtatgatgctgatgtgtgtgtatgtgcatgtgcacatgagtgcagctatgtatgtgcca 501

                                                                       
Query: 302 cagcacgtgcatagagcttatacgatagcttctgttatttcccgctttttatcctgtttg 361
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 cagcacgtgcatagagcttagacgatagcttctgttatttcccgccttttatcctgtttg 561

                                                  
Query: 362 agatagacgtcttgctgttcgctgctgtgtatggcagtc 400
           ||||||| |||||||||||||||||||||||||||||||
Sbjct: 562 agatagatgtcttgctgttcgctgctgtgtatggcagtc 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)