Query= MSMg01no403_f02.b1 MSMg01no403_f02.b1 CHROMAT_FILE:
MSMg01no403_f02.b1 PHD_FILE: MSMg01no403_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:33 2005
(403 letters)
>mm_chr5_75807406_75808208
Length = 803
Score = 743 bits (384), Expect = 0.0
Identities = 398/408 (97%), Gaps = 9/408 (2%)
Strand = Plus / Plus
Query: 5 gaattctatgtcacctctactatttttttcctccacatgttcatggattagatgagtgac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattctatgtcacctctactatttttttcctccacatgttcatggattagatgagtgac 255
Query: 65 tttgcac---------tctctgaaatgttcattttctatgggtctctgttcaaaagctct 115
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tttgcactggttgcattctctgaaatgttcattttctatgggtctctgttcaaaagctct 315
Query: 116 catgaatgtcagcttctctgatgatgcccctgggatactaagccacttcttccgtctttt 175
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 catgaatggcagcttctctgatgatgcccctgggatactaagccacttcttccgtctttt 375
Query: 176 tattttgccccgcccctgtgggaacttattactattagttataccatctcttagaaggaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tattttgccccgcccctgtgggaacttattactattagttataccatctcttagaaggaa 435
Query: 236 gcatcacagaggtagagattttgccagtgtgagacttgtgggatgagtcacctaggaatg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcatcacagaggtagagattttgccagtgtgagacttgtgggatgagtcacctaggaatg 495
Query: 296 acagtccatcttgcataggaacgtccgtcacccagcaactaccacctatggagcaaaatg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 acagtccatcttgcataggaacgtccgtcacccagcaactaccacctatggagcaaaatg 555
Query: 356 ggattgttatcccagaaaaagtgagggtggtaggagaaaatgccaagc 403
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggattgttatcccagaaaaagtgagggtggtaggagaaaatgccaagc 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_f02.g1 MSMg01no403_f02.g1 CHROMAT_FILE:
MSMg01no403_f02.g1 PHD_FILE: MSMg01no403_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:33 2005
(382 letters)
>mm_chr5_75980512_75981294
Length = 783
Score = 687 bits (355), Expect = 0.0
Identities = 376/383 (98%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 1 actagaacataagccccaggtctgggctattcactgctat-cccccacccaagtttaata 59
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 583 actagaacataagccccaggtctgggttattcactgctatccccccacccaagtttaata 524
Query: 60 gctactcataccggctctgttcaagagcagcaccacagaaggcgctgtgctggccagcag 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gctactcataccggctctgttcaagagcagcaccacagaaggcgctgtgctggccagcat 464
Query: 120 ctgacaccactgctgtcccttgtcacttcctgtgtcaggagatgctccctgcccgctggc 179
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctgacactgctgctgtcccttgtcacttcctgtgtcaggagatgctccctgcccgctggc 404
Query: 180 acttgctctcccagccccttatggagacagcggttctaaactggatgataattttaagtt 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 actcgctctcccagccccttatggagacagcggttctaaactggatgataattttaagtt 344
Query: 240 aatgtcccttgaaaaatgctggaaatgtaaattaagcaacacattcagatctgaagaaga 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 343 aatgtcccttgaaaaatgctggaaatgtaaattaggcaacacattcagatctgaagaaga 284
Query: 300 aactcacaaccccttctacatatgctaagcttattttaaaaactggggcggtgggtcctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aactcacaaccccttctacatatgctaagcttattttaaaaactggggcggtgggtcctc 224
Query: 360 ttctatcaaagtgatgctttctg 382
|||||||||||||||||||||||
Sbjct: 223 ttctatcaaagtgatgctttctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 783
Length adjustment: 9
Effective length of query: 373
Effective length of database: 774
Effective search space: 288702
Effective search space used: 288702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
