BAC Information

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BAC

Clone NameMSMg01-403J19
Chromosome5 (Build37)
Map Location 137,412,278 - 137,412,738
singlet/doubletsinglet
Overlap genenone
Upstream geneSrcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5
Downstream geneFis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403J19.T7 (MSMg01no403_j19.b1)MSMg01-403J19.TJ (MSMg01no403_j19.g1)
ACCAG502482AG502483
length797779
length of high quality
(start - end)
465 (38 - 502)327 (68 - 394)
definitionCHROMAT_FILE: MSMg01no403_j19.b1 PHD_FILE: MSMg01no403_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:58 2005CHROMAT_FILE: MSMg01no403_j19.g1 PHD_FILE: MSMg01no403_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
CTTGACCAAAGCCCTATGCTCGGGAAGGTATTTCAATTAATCCCTTCCCC
TAGAGCCCTGAAGACCTTTTGGTCAGAATCCTAACCTACAGATAGTATCA
GCTCATTCATTTCAAACTCCCCTATTATCTAAGTCATCTGGCTGGTCACA
AGGAACGGACGGCCATGGCAGTGCACAAGTGAGGGGTGTGCTGAATGTGG
TTGTCTGCTGGGAGAGAGGGCTACAAGAGAAATTGGCAAGAAAAACCATG
CAGAGGTGGCCCAGTGCTTCTCATTAGAGAATACACAGAAAAGAAATGCA
CCCATAAAGGTTGTGGGAGAGGCTTGAACACATCACCCCATGGCTGAGTG
GTGTAGCGCCCTCATGTGGAGGAACAGGGAAAAGCTGCTGTTCTCTTCAC
TGAATTTAAGATAATACTAAGCTAGGAAGGTTTTCTGGGGCGGGGGGAGA
CTGGCTTAAAGGTATTAGCTGCCTCAGCCAATGGTGATTACTATGCAAGT
CCTATGATCCCATGGGCTCATCCATGCTAATTTCGTTGCAAAACGTGACT
CCCATGCCCAGTTTGTGTTCTATCACGGACATTTATTCCCGCCTTTGCCA
TTTCTTTCAGATCTATTTCTTCATCCTTACTCCTATACATAGTTTGTCGC
ACGTTTATTCCCTCTGTTTTAACCCTCTGCCCTCTTTAACCCCCTCCGTA
TTTTCTCTGCTCCCACTTGTTCCTTATCCGCCTCTTTTTCCCCTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCTGTCAGACCTTCAGTGT
TTGTATTCCTCTGTTTTGTGTAAGAATCCAATAACCTCTTTGTACCTTGC
TGGTGTGTCACCCAACTTCCTTATTTTCTTCTGTATAAAAAGTTTGATGC
TCGATTTGACAAATTACATTCAGATTCTACACAACCTCTCCTGTGTGCAT
CTGTCTGTCATTCCATCCAACGCTTTGCCCACCTGCCCCAGAGACCCGTT
CCACGCAGATTATTTGATCCAGGCGTCTGCGGCAACCTTCCTCCTCTACT
GCCCCAGGGCCAGGATCACTGTGGTGCTGAGGATGGACACAGGGCATCCC
GGTTAAGCACTCTGCCACCTGAGCTATATCCCTGGCCCTGGGTTGGCTTT
TAATGAAATCTTCCCTTGCATACTTAATTCATTAAATCTCTGGAAGTTGA
TATTGACAGATGGCGTGAAGGACAAGAGCTATTCCCATCTCCTTTCCAAT
AGCTAAATCAATGCTCCGGTATTACTCTTTTAATACTTCCACCTCCTTTC
CTTATTATCTGCCAAACCCACCTCCCGATAACTGATAACCCTTCTTCCCT
TTTTTATTCTAATTTTTTTAAACACCCCCCTTTTCTTTATACCCCCCATT
GCTCTCATGCGTTCCCTTTCATTTCCTTCCACTCTTTATTTCATACTATT
TTATTTTATTTTATTCCCTCTACCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_j19.b1 MSMg01no403_j19.b1 CHROMAT_FILE:
MSMg01no403_j19.b1 PHD_FILE: MSMg01no403_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:58 2005
         (465 letters)



>mm_chr5_137412074_137412938
          Length = 865

 Score =  861 bits (445), Expect = 0.0
 Identities = 457/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacttgaccaaagccctatgctcgggaaggtatttcaattaatcccttcccct 64
           ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattcacactggagaaaagccctatgctcgggaaggtatttcaattaatcccttcccct 606

                                                                       
Query: 65  agagccctgaagaccttttggtcagaatcctaacctacagatagtatcagctcattcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agagccctgaagaccttttggtcagaatcctaacctacagatagtatcagctcattcatt 546

                                                                       
Query: 125 tcaaactcccctattatctaagtcatctggctggtcacaaggaacggacggccatggcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcaaactcccctattatctaagtcatctggctggtcacaaggaacggacggccatggcag 486

                                                                       
Query: 185 tgcacaagtgaggggtgtgctgaatgtggttgtctgctgggagagagggctacaagagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgcacaagtgaggggtgtgctgaatgtggttgtctgctgggagagagggctacaagagaa 426

                                                                       
Query: 245 attggcaagaaaaaccatgcagaggtggcccagtgcttctcattagagaatacacagaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attggcaagaaaaaccatgcagaggtggcccagtgcttctcattagagaatacacagaaa 366

                                                                       
Query: 305 agaaatgcacccataaaggttgtgggagaggcttgaacacatcaccccatggctgagtgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agaaatgcacccataaaggttgtgggagaggcttgaacacatcaccccatggctgagtgg 306

                                                                       
Query: 365 tgtagcgccctcatgtggaggaacagggaaaagctgctgttctcttcactgaatttaaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgtagcgccctcatgtggaggaacagggaaaagctgctgttctcttcactgaatttaaga 246

                                                    
Query: 425 taatactaagctaggaaggttttctggggcggggggagact 465
           ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 245 taatactaagctaggaaggttttctggggtggggggagact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)