Query= MSMg01no403_n07.b1 MSMg01no403_n07.b1 CHROMAT_FILE:
MSMg01no403_n07.b1 PHD_FILE: MSMg01no403_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:16 2005
(433 letters)
>mm_chr5_63673519_63674351
Length = 833
Score = 516 bits (267), Expect = e-151
Identities = 282/287 (98%)
Strand = Plus / Minus
Query: 2 ttgaagcaagataaagctaatcaaaatagagttatccagagactcctcaatgataacaca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgaagcaagataaagctaatcaaaatagagttatccagagactcctcaatgataacaca 429
Query: 62 gattttgaaattagaaatgtatttttcttgtctttatactgcttaagactgaacctacgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 428 gattttgaaattagaaatgtatttttcttgtctttatactgcttaagactgaatctacga 369
Query: 122 cacagcaggcaagtattgtcctactgagtggactcctcagtctagcagtaactcttgacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cacagcaggcaagtattgtcctactgagtggactcctcagtctagcagtaactcttgacc 309
Query: 182 cacgagttaaagacattgcaacagtgaattaaatgaaattgccacaggagatatggttaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cacgagttaaagacattgcaacagtgaattaaatgaaattgccacaggagatatggttaa 249
Query: 242 gtattgttggactgggaggaaagattattgtaaaattatgggataga 288
| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gcactgctggactgggaggaaagattattgtaaaattatgggataga 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_n07.g1 MSMg01no403_n07.g1 CHROMAT_FILE:
MSMg01no403_n07.g1 PHD_FILE: MSMg01no403_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:16 2005
(439 letters)
>mm_chr5_63469364_63470202
Length = 839
Score = 799 bits (413), Expect = 0.0
Identities = 432/445 (97%), Gaps = 12/445 (2%)
Strand = Plus / Plus
Query: 1 atgagacaggtagtttggtctcacctgaccagaatgtgtatgtctatgagtgtgtgtgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagacaggtagtttggtctcacctgaccagaatgtgtatgtctatgagtgtgtgtgcc 260
Query: 61 tatacatactgccggttgaaaagatttcctttctgcgtgtgtgactttcttttcctggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatacatactgccggttgaaaagatttcctttctgcgtgtgtgactttcttttcctggat 320
Query: 121 cacaaagagttaacagaactctgagcctctctgtgatctttgctgatcattgagggactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaagagttaacagaactctgagcctctctgtgatctttgctgatcattgagggactt 380
Query: 181 cacagtaaaagatcagaaacccagaggaatcacttgtttacttaatccccagcagatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagtaaaagatcagaaacccagaggaatcacttgtttacttaatccccagcagatgtt 440
Query: 241 aattttttt------aagccagtggtttctgaccccagaatagcagagttaagaaggata 294
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aat------ccccagaagccagtggtttctgaccccagaatagcagagttaagaaggata 494
Query: 295 aatcttacaaagggtaagaaacattttagtctttgcaaaatttattactctcccccaaat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatcttacaaagggtaagaaacattttagtctttgcaaaatttattactctcccccaaat 554
Query: 355 tatcaatgcttttgccactgctgcttacagagagaactaaagcctggcaggctccaggta 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 555 tatcaatgcttttgccactgctgcttacagagagaactaaagcctggcaggctccaggca 614
Query: 415 gcaggctttgatttgattcaattga 439
|||||||||||||||||||||||||
Sbjct: 615 gcaggctttgatttgattcaattga 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
