BAC Information

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BAC

Clone NameMSMg01-403P16
Chromosome5 (Build37)
Map Location 103,968,625 - 104,130,945
singlet/doubletdoublet
Overlap genePtpn13, Slc10a6, 1700016H13Rik
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneAff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403P16.T7 (MSMg01no403_p16.b1)MSMg01-403P16.TJ (MSMg01no403_p16.g1)
ACCAG502761AG502762
length802796
length of high quality
(start - end)
244 (67 - 310)243 (72 - 314)
definitionCHROMAT_FILE: MSMg01no403_p16.b1 PHD_FILE: MSMg01no403_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:28 2005CHROMAT_FILE: MSMg01no403_p16.g1 PHD_FILE: MSMg01no403_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,968,625 - 103,968,868)(104,130,703 - 104,130,945)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCATACGGATCCGCGGAATTC
TGTGGTTTCAATGAAGATCTTGAATTCTGCTTTAGTCACAGACAAGGACC
ACTGCCCCTGGTGATAATGGGGCATGTTAACTCAGGGCTGATTTTGATGC
ATAAACATTAAAATCACAATGCCTTTCTACCCATTGTAAATACTATTAAT
CTTGTGTGCAGTAGAAGACAAGAGAAATGGTATCTAAGTCATCTGTCTGA
CATGATGTCATACCCCACTCCCGACAGAGTGCACCTCATCCTATAGTTAC
AGTGGGACCCATTTATCCTTGTGTGGTCCGGTTAGCCTAACTCACAAACA
GCAAAATCACCCAAGGCTCTGTTGCTTAGTCATCTTCTTGTGCTACAGTG
GTTTTGCCAACAGCTTCAAATGTCAAATACTGCTGTGATGATGGAGAACA
ACCATGGTTATGATCTAAAAGCTTTCTAAATTTAACTTCCACAACGCTTT
TTTTTTGGTCTTCATTGACCACCAAATCTAATCTATATATGTACAACTTT
CTGTTCATCCATATCACCTTCCCTTCATTTTTCCCTCTTCCCTATTTTTA
TTTCCCCACCCCTTCCCCTTTTTTTTCTTCTCCCCTTATTTTCCCCTTCT
CCCTCCTCCTTTTCTTTTTATCCTTCCACCTCCCTCTTTTTTCCCCTTTT
TTTCTACACTCTCTCCTTATTTCCCCTCTTTTTTCCCCTTTTTTTCTCCC
CTTCTTCTCCCTTTTTCTTCCTTTTTCCACCCTCCTCACCCCTCCTCATC
CG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCATAGCAGGGAAGAGTCAGTCACAGGC
ATGGCAGCAGGGACAGCTGAGACCTCACATCTCCAATCTTGAGGAGGAAG
CAGAGAGAAGGGACTTGAAATGCCAGCACCTAGTGACATAGTTCCTGCAG
AAGTACAAAGTGGGACCAAATGTTCAAGCATGTGAACTTACTTTCGGGAG
AGCATTTGAATTCACAATCGGTGTGTATCAGTGTTTTTGCTGTCTGTGTG
CATGCAATACCCTCATAGGTCAGAAGAGGGCGACAGATCCCCCAGAACTG
AAGTTACAGATGGCTGTAAGCCACTGTGTGGGTCCCAAGAACAGAAATAG
CTCATCCCAAAGAATAGCAAGTGCTCTTGCCTGAAGAGTCATTGCTCCTG
ACCCCGCGCTTATGATTTATCGCCCATATGGCCATATGTCTCCCACCATA
TATTTCTCCGGTCTACTATACTTTTGTCTTCCCAATTTCCACCCCTCCTG
TTTTCCCCCTTCGTTTTCCTCTTTTCCTTTTCCCCCCCTACTCCCCTTCC
CTCCCCCTTTATTTTATCCTTCCTCCCTCCCCTTCTCCCCCCCCCTTTTC
TCCCCCTTCTCTTTTTTTTTTATTTTCACCCCCCTTCTTTTCCCCTTTTT
TTCCCGTTCTTTTTCCTCCCTCCTCTTCTTTCACCCCCCTCCGCTTCCCC
CCTCTGTTTTTTCTTTTATCCACCCTTTACACCTCTTCTGCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_p16.b1 MSMg01no403_p16.b1 CHROMAT_FILE:
MSMg01no403_p16.b1 PHD_FILE: MSMg01no403_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:28 2005
         (244 letters)



>mm_chr5_103968425_103969068
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttgaattctgctttagtcacagacaaggaccactgcccctggtgataatggggcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttgaattctgctttagtcacagacaaggaccactgcccctggtgataatggggcatg 260

                                                                       
Query: 61  ttaactcagggctgattttgatgcataaacattaaaatcacaatgcctttctacccattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaactcagggctgattttgatgcataaacattaaaatcacaatgcctttctacccattg 320

                                                                       
Query: 121 taaatactattaatcttgtgtgcagtagaagacaagagaaatggtatctaagtcatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 taaatactattaatcttgtgtgcagtagaagacaagagaaatggtatgtaagtcatctgt 380

                                                                       
Query: 181 ctgacatgatgtcataccccactcccgacagagtgcacctcatcctatagttacagtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacatgatgtcataccccactcccgacagagtgcacctcatcctatagttacagtggg 440

               
Query: 241 accc 244
           ||||
Sbjct: 441 accc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no403_p16.g1 MSMg01no403_p16.g1 CHROMAT_FILE:
MSMg01no403_p16.g1 PHD_FILE: MSMg01no403_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:28 2005
         (243 letters)



>mm_chr5_104130402_104131044
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatagcagggaagagtcagtcacaggcatggcagcagggacagctgagacctcacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 accatagcagggaagagtcagtcacaggcatggcagcagggacagctgagacctcacatc 485

                                                                       
Query: 61  tccaatcttgaggaggaagcagagagaagggacttgaaatgccagcacctagtgacatag 120
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tccaatcttgagcagaaagcagagagaagggacttgaaatgccagcacctagtgacatag 425

                                                                       
Query: 121 ttcctgcagaagtacaaagtgggaccaaatgttcaagcatgtgaacttactttcgggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttcctgcagaagtacaaagtgggaccaaatgttcaagcatgtgaacttactttcgggaga 365

                                                                       
Query: 181 gcatttgaattcacaatcggtgtgtatcagtgtttttgctgtctgtgtgcatgcaatacc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 364 gcatttgaattcacaatcggtgtgtatcagtgtttttgctgtctgtgtgcatgcaatagc 305

              
Query: 241 ctc 243
           |||
Sbjct: 304 ctc 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)