XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTCTTTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCCTATATCTTCAAGGCTTTTCCCCACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAG
ATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTA
CATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTT
CTTCCACTGGATGTGTTTAGCTCCCCTGCCGAAAAATCATTGACCTTACG
TGTGTGGGCTCATTTCTGTTTTTCCTCACTCTCATTCTTTGGGCCAACTT
GTCTTGCCCCTTTACCCGTTTCTTGTTCTTTTTCTCCCCATTTTGTTCCG
GTCTTAATCTTTTTTCTCCTTCACTTTTGTTCTTCCCCACCCTCTTTTCC
TCTTTCTTCTCGCAATTTTATTCCTTTTTTCCCCCCCTCTTTTTGTGTTT
TCCCCTTCCTTTTATTTCTCCCTTCCTCCTATACCCCTCACCCTCTTTTA
TTCAAATTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGTAAGGACTAGGCAGGGGGTAGTGAAGAAACA
CTGTCTCAATGGACAATAATAATAGTTTAGATTGCTTGAATTGTTTTGAA
TTGTTTTAATTATCAAAATGCAGTTATATGTTTGGTGGTTATCATATTAA
AAATCCTTTGTGAGAGAGGTCAGAACAGAGTAGGCCTAAAGAGAATGGAG
GCTGCTAATTTGAATCATCTATTCCTTTGATGATTTTGAGTTGCTGGGCC
AAGGACATGCCATTTTGGAAAGAAGTTCTGTATTGTGTTAATAAGAAAGA
AGAAAAGGTTTTGGACCCCGTTCAAAGTGATATGGATCAGAAATGATAGG
GGAAGACCTCCCTGAAAATCTTGGATACACACAGAAAAATTTGAGAAGAT
TAAACAAGACAGGTAACATGATTTGTTGATTCCTCTACATGGGAACAGTC
CTGTAACTGGCTTAAACATAAAAATGTCTCTAGCCAAACTTTAGCTAAAA
TTAGACAGCCTTGCTGCTTACAGAATCCCCAAGATTCATCATGCCATCTT
TCCTATTGCATGAATAATGGTTTATTACAATTAACTCCTTACAGGATATT
TCGTTCTTCCTTTCTTCAAGCATGGTTTCACACCTTTACCCTTTATTTTA
TTCGCCGCCCTTCGGTCCACTTCATACAACATCCTTTCATCCCCTCATTT
TTCTATCGTTAAAATCCTCCATTCCCCTTTCCTCCC

Query= MSMg01no403_p21.g1 MSMg01no403_p21.g1 CHROMAT_FILE:
MSMg01no403_p21.g1 PHD_FILE: MSMg01no403_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:29 2005
         (460 letters)



>mm_chr5_16704965_16705827
          Length = 863

 Score =  213 bits (110), Expect = 2e-59
 Identities = 380/476 (79%), Gaps = 31/476 (6%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtaaggactaggcagggggtagtgaagaaacactgtctcaatggacaataataatagtt 61
           |||||| || ||||||||| ||||| || |||||||| |||||||| |||  |||| | |
Sbjct: 202 tgtaagaacaaggcaggggatagtggaggaacactgtgtcaatggaaaattgtaattg-t 260

                                                                       
Query: 62  tagattgc-ttgaattgttttgaattgttttaattatcaaaatg--ca-g-ttatatgtt 116
            ||||| | ||| |||||||||||||||||||||||||||||||  || | ||||| |||
Sbjct: 261 cagatttctttg-attgttttgaattgttttaattatcaaaatgtacatgattataagtt 319

                                                                       
Query: 117 tggtggttatcatattaaaaa-tcctttgtgagagaggt--cagaacagagtaggcctaa 173
           ||| |||||| |||||||||| |||| ||    ||||||  || || || | || ||| |
Sbjct: 320 tggaggttatgatattaaaaaatcctctg----agaggtttcaaaatagggcagtcctca 375

                                                                       
Query: 174 agagaatggaggctgctaatttgaatca-tctattcctttgatgattttgag-ttgctgg 231
           ||||||  |||||||||||||||||||| ||||| |||||||| ||||| || || ||||
Sbjct: 376 agagaaaagaggctgctaatttgaatcaatctatacctttgataatttt-aggttactgg 434

                                                                       
Query: 232 gccaaggacatgccattttggaa-agaagttctgtatt-gtgttaataagaaagaagaaa 289
            |||||| ||||| | | ||| | ||| | ||| |||| |||||| || ||||||| |||
Sbjct: 435 accaaggccatgctaatatgggagagaggctctatatttgtgttattaggaaagaacaaa 494

                                                                       
Query: 290 aggttttggaccccgttcaa-agtgatatggatcagaaatga--taggggaagacctccc 346
           ||| |||| ||||| ||| | |||||||  ||||||  || |  |   ||| ||||  ||
Sbjct: 495 aggctttgaacccc-ttccagagtgatacagatcaggtataacct---ggaggacc--cc 548

                                                                       
Query: 347 tgaaaatcttggatacacaca-gaaaaatttgagaagattaaacaagacaggtaacatga 405
           |||| ||||||| |||| | | |||| |||  | || || ||||| |||||||||| |||
Sbjct: 549 tgaagatcttggctacagaaaagaaatattcaacaaaatcaaacaggacaggtaacttga 608

                                                                   
Query: 406 tttgttgattcctctacatgggaacagtc-ctgtaactggcttaaacataaaaatg 460
           |||| ||||||||| |||| ||||||  | |||||||||||||| |||||||||||
Sbjct: 609 tttgctgattcctccacataggaacaa-cactgtaactggcttagacataaaaatg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 863
Length adjustment: 10
Effective length of query: 450
Effective length of database: 853
Effective search space:   383850
Effective search space used:   383850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)