BAC Information

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BAC

Clone NameMSMg01-404A22
Chromosome5 (Build37)
Map Location 33,320,865 - 33,484,771
singlet/doubletdoublet
Overlap geneDepdc5, Ywhah, LOC100040169, Slc5a1
Upstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141
Downstream geneSpon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404A22.T7 (MSMg01no404_a22.b1)MSMg01-404A22.TJ (MSMg01no404_a22.g1)
ACCAG502821AG502822
length749768
length of high quality
(start - end)		448 (37 - 484)428 (67 - 494)
definitionCHROMAT_FILE: MSMg01no404_a22.b1 PHD_FILE: MSMg01no404_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:35 2005CHROMAT_FILE: MSMg01no404_a22.g1 PHD_FILE: MSMg01no404_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,320,865 - 33,321,308)(33,484,344 - 33,484,771)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAA
GCTCTTGTGTACAGCCTGGTTGAGTTTCTGAGTTTGTGATAATGGTTAAG
ATAACATTCCTCTCTCATAAAAGAAAGGAATGGATTGGCCCAGGAGTCAA
ACTGTGGCATAATCGGCTAAACCTAGCTTATGATTTGCTTTATAACTGGC
CCTCCTTTTTATATATTTACAAGTATTTGTGTGTTTGTGCATACATAGAG
GCCACAAGATAGCAATGGTGTCCTGTATCACTGTGTGCCTTCTCAGTCCT
TTGAGGCAGGGTCTCTTCCTGGAGCTTGTATTTTCTCAGCTAGGCTGGAA
GCCAACAGGCTCCAGTGATCCTCTTACCTCTGCCTCCTTTAGAGCAGTGG
TTACAAGTGCGTGGGACACCTGGCTTCTATGTGGGCACTAGGGCCTGAAC
TCTGAGCTTCATTGATTGTACAGTAGGCACTCTTAAATGATAAGCTATTT
CTCCAGCCCCCAGATTTTGTTTTTTGAGACAGGGTCTGACTATATTACAC
AGGGTCCCCAACTTACATTCCTCCTCCCTAAGCCTTCTGAATGCTAGGAT
TACAGAATTAAGCACCCTGGGTGACTATAACACCAATTTCTTAAATAAAA
TTAATCCTCCCCCCGGTGAGAAAAATTCCCAAATTCCCTGCCTCCCCAAC
CATCCCCTCTTGGAACCCCCCCAAAAAATTTGCTGTCCCCAACCACCAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAACTAATAAACAAAGATGAAGGAAATGGCCGAG
AGAGTAAGACAAGAATGCCGACATTTAAGAGGCCAAGTTGGAAAAGCGAA
ACTGGAAGCTGAGAGGTTGAGTTTGCTCTTCTGTGGCCCTGGAAGAAGAA
CAGATACGGTGTTTGGAAGAGCAACAGTAACTCCGTACCGTGGAGAGAGA
AGGATAATCAAGCTAAGGTAAACTACAACAATCTGAAAGTGCTCAGAAAA
GAGAAATTCTCTTCATGGATACGAATTAAAGAGACAACAGGAGAAACTGG
AAGCCTCGGAGGCAAAGAAAGAATTAAAAACAGAAAACCTGGGCTAAGTA
GGCAAAATGTTCTATTTGAAGAATATACAAGACTTGAAAATCACTAAAGG
ATACACAGAGAAGATTTAATGAACTTCAAAGTCTCAGTTTTGGTTCCTAA
CATGTCCCCCACAGCATCCGGGAATTCTGCTGACTGTTATCAGCCTCAGC
TCTTGGACTAAGCCGCTCCTTCCCCCCTCAAATGGAAGCCTGGCTACTTC
CCAAACATCAAAGGCTAAAAAAAAGCCCCCAGAAGAACTTATAAAAACTC
GAATCCCCGGGGGAAGGAAGGTGGAAAAAAATGGGTGAAAGGCAAAAAAC
CTACTTTGGGTAAAGTTCACACCCCCGCCCTGGGAAAACTTTTTTCTGGT
TGTGGGGAGAAATAAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_a22.b1 MSMg01no404_a22.b1 CHROMAT_FILE:
MSMg01no404_a22.b1 PHD_FILE: MSMg01no404_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:35 2005
         (448 letters)



>mm_chr5_33320661_33321508
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 440/444 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaagctcttgtgtacagcctggttgagtttctgagtttgtgataatggttaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaagctcttgtgtacagcctggttgagtttctgagtttgtgataatggttaag 264

                                                                       
Query: 65  ataacattcctctctcataaaagaaaggaatggattggcccaggagtcaaactgtggcat 124
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 ataacatccctctctcataaaagaaaagaatggattggcccaggagtcaaactgtggcat 324

                                                                       
Query: 125 aatcggctaaacctagcttatgatttgctttataactggccctcctttttatatatttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcggctaaacctagcttatgatttgctttataactggccctcctttttatatatttac 384

                                                                       
Query: 185 aagtatttgtgtgtttgtgcatacatagaggccacaagatagcaatggtgtcctgtatca 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtatttgtgtgtttgtgcatatatagaggccacaagatagcaatggtgtcctgtatca 444

                                                                       
Query: 245 ctgtgtgccttctcagtcctttgaggcagggtctcttcctggagcttgtattttctcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgtgccttctcagtcctttgaggcagggtctcttcctggagcttgtattttctcagc 504

                                                                       
Query: 305 taggctggaagccaacaggctccagtgatcctcttacctctgcctcctttagagcagtgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taggctggaagccaacaggctccagtgatcctcttacctctgcctcctttagagcagtgg 564

                                                                       
Query: 365 ttacaagtgcgtgggacacctggcttctatgtgggcactagggcctgaactctgagcttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttacaagtgcgtgggacacctggcttctatgtgggcactagggcctgaactctgagcttc 624

                                   
Query: 425 attgattgtacagtaggcactctt 448
           ||||||||| ||||||||||||||
Sbjct: 625 attgattgtgcagtaggcactctt 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_a22.g1 MSMg01no404_a22.g1 CHROMAT_FILE:
MSMg01no404_a22.g1 PHD_FILE: MSMg01no404_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:35 2005
         (428 letters)



>mm_chr5_33484144_33484971
          Length = 828

 Score =  820 bits (424), Expect = 0.0
 Identities = 427/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactaataaacaaagatgaaggaaatggccgagagagtaagacaagaatgccgacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaactaataaacaaagatgaaggaaatggccgagagagtaagacaagaatgccgacattt 569

                                                                       
Query: 61  aagaggccaagttggaaaagcgaaactggaagctgagaggttgagtttgctcttctgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aagaggccaagttggaaaagcgaaactggaagctgagaggttgagtttgctcttctgtgg 509

                                                                       
Query: 121 ccctggaagaagaacagatacggtgtttggaagagcaacagtaactccgtaccgtggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccctggaagaagaacagatacggtgtttggaagagcaacagtaactccgtaccgtggaga 449

                                                                       
Query: 181 gagaaggataatcaagctaaggtaaactacaacaatctgaaagtgctcagaaaagagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gagaaggataatcaagctaaggtaaactacaacaatctgaaagtgctcagaaaagagaaa 389

                                                                       
Query: 241 ttctcttcatggatacgaattaaagagacaacaggagaaactggaagcctcggaggcaaa 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttctcttcatggaaacgaattaaagagacaacaggagaaactggaagcctcggaggcaaa 329

                                                                       
Query: 301 gaaagaattaaaaacagaaaacctgggctaagtaggcaaaatgttctatttgaagaatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaagaattaaaaacagaaaacctgggctaagtaggcaaaatgttctatttgaagaatat 269

                                                                       
Query: 361 acaagacttgaaaatcactaaaggatacacagagaagatttaatgaacttcaaagtctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acaagacttgaaaatcactaaaggatacacagagaagatttaatgaacttcaaagtctca 209

                   
Query: 421 gttttggt 428
           ||||||||
Sbjct: 208 gttttggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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