Query= MSMg01no404_b05.b1 MSMg01no404_b05.b1 CHROMAT_FILE:
MSMg01no404_b05.b1 PHD_FILE: MSMg01no404_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:36 2005
(494 letters)
>mm_chr5_39764526_39765419
Length = 894
Score = 700 bits (362), Expect = 0.0
Identities = 371/374 (99%), Gaps = 1/374 (0%)
Strand = Plus / Minus
Query: 121 atctgcttagggagcccactaggacaatggttctcatccttcataatgctgtgacccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 atctgcttagggagcccactaggacaatggttctcatccttcataatgctgtgacccctt 835
Query: 181 aataaagtttctcacattatcatagctttgcttgttatgaattgtagtgtagatatctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 aataaagtttctcacattatcatagctttgcttgttatgaattgtagtgtagatatctgt 775
Query: 241 attctgattgttgtaggagacccctgtgaaagggttggttgactccctaaagagttctcc 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 774 attctgattgttgtaggagacccctgtgaaagggttggttgac-ccctaaagagttctcc 716
Query: 301 agccacaggttgagaaccactatactaggacatttgcatactgatgcttctgattggagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agccacaggttgagaaccactatactaggacatttgcatactgatgcttctgattggagc 656
Query: 361 tgttttgtctgtgacaatgactctcaaacctagcagccctcaaggaccgtcttctacctc 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 655 tgttttgtctgtgacaatgactctcaaacctagcagccctcaaggactgtcttctacctc 596
Query: 421 agtcttttctatctgctatttgtaattcaataagtgaaaggagaagccactctgacaaca 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agtcttttctatctgctatgtgtaattcaataagtgaaaggagaagccactctgacaaca 536
Query: 481 aagataatgtcctc 494
||||||||||||||
Sbjct: 535 aagataatgtcctc 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_b05.g1 MSMg01no404_b05.g1 CHROMAT_FILE:
MSMg01no404_b05.g1 PHD_FILE: MSMg01no404_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:36 2005
(413 letters)
>mm_chr5_39521411_39522219
Length = 809
Score = 741 bits (383), Expect = 0.0
Identities = 404/413 (97%), Gaps = 4/413 (0%)
Strand = Plus / Plus
Query: 1 tgagtttgttatctttgaaactaagtgtgtcaatgatgctttcaggggagacaagttaca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgagtttgttatctttgaaactaagtgtgtcaatgatactttcaggggagacaagttaca 260
Query: 61 cattgttatcatttccagtcactctaggtgctcctagatgcagtcttttaccatgtagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattgttatcatttccagtcactctaggtgctcctagatgcagtcttttaccatgtagac 320
Query: 121 atagaacatagctactgcagccttaaccacacacacacttacaaatgacaattctcttta 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaacatagctactacagccttaaccacacacacacttacaaatgacaattctcttta 380
Query: 181 tgtggatatcccaaagtgtccaccctatgtcaatttctgcgaattagaattatatgtttc 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tgtggatatcccaaagtgtccaccctatgtcaatttctgcaaattagaattatatgtttc 440
Query: 241 ccattctttcctctttcctattgagacttggaaatctctttctccctttacagctcagta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattctttcctctttcctattgagacttggaaatctctttctccctttacagctcagtg 500
Query: 301 tgatccccccttctatataacctaatccagtcttgctcctgactttcaaaaatcattcct 360
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tgatcaccccttctatataacctaatccagtcttgctcct----ttcaaaaatcattcct 556
Query: 361 tctttgctcttgtgatattataattataatttataattataattctcagacca 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctttgctcttgtgatattataattataatttataattataattctcagacca 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 809
Length adjustment: 9
Effective length of query: 404
Effective length of database: 800
Effective search space: 323200
Effective search space used: 323200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
