BAC Information

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BAC

Clone NameMSMg01-404D10
Chromosome5 (Build37)
Map Location 51,154,449 - 51,154,910
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404D10.T7 (MSMg01no404_d10.b1)MSMg01-404D10.TJ (MSMg01no404_d10.g1)
ACCAG502939AG502940
length762767
length of high quality
(start - end)
408 (33 - 440)462 (65 - 526)
definitionCHROMAT_FILE: MSMg01no404_d10.b1 PHD_FILE: MSMg01no404_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:48 2005CHROMAT_FILE: MSMg01no404_d10.g1 PHD_FILE: MSMg01no404_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCCTATTTCGAGAGGATCCGCGGAATTCTCTAATA
TTCCTGGCACTAGGCAGGTTTGGTTGGGAGAGTTTTGATTATTGCTTCTG
TTTCCTTAGGGGTTGTAGAAATATTTTAATAGTTTACTTGATCCTGATTT
AACTTTGGTAAGTGAGATTTTTCAAGAAAGTCATCCATTTTGTTAATATT
TTTCAATTTTGTGGAGTAAAGACATTTGAAATAAGACCTAATGATTCTTT
GGATTTCCTCAGGGTCTGTTGTTATATCTCCCTTCTCATTTCTGATTTTG
TTAATTTTTGTTCTATCTCTCTGCCTTTTAGTTTGGCTAGGAGTTCATTT
ATCTAGTTGATTTTCTCAAAGAACCAGATCTTGGTTTTATTGATTCTTTG
TATTTTTCTCTTTGCTTTTAATTGATTGATTTTTAACCTAGAGTTTAATT
GTTTCCTGTCCTCCACTCCTCTTGGGTGCGGTTTTTTTTTATTTTTTTAA
ATCACTCTGTCTTTTATCTTTTTTTTTATCACCTCTTAATTTTTTTTCCC
CTCCTTTCTTTTTTTTTTTTTCCCCCTCTTTTCTATTTTAACTTACAATA
GTTTTTATTTCTACTTTTCCCCCTTTTTTCTAATACACTTTTTTTTTATT
CCCCCCCATTATTTTACCAACCATATTTTATTAACCATTTTCCCCTCCCC
CAATTCTTTTAATTTTCTCTCTTTTTTACTCTCTTCCCCACCCTTCTCTT
TTATTTATTCTG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTAAGCAGCCATCAGTCCTAATGTTCCTCTTAGCTTC
TTATCCCAATTCAGGGTTCTGCTTTGCCAAAGGAACAGAAAGAGTTATCA
TCAGTTTCTAATGACGGGGCTTACTGACCAGAAACACATATGGCCTGGTA
AAGGTACCACCTGTGAATTAAATCACAGTCGGTATGAACACTTCTAAGAA
TGCAGTCTCCAGGACACAATCTGAGTAGGCAAACCATGCATGGGATTGGA
TCTTAACCAAAAGAATATTCTGCACCTCTATAATGTGAGTTAAATAAGTG
AATAAGCATAGCAACAGAGTTTTGCTCTAATCTCGTATGTTTCAGCATTT
CATATCATCTACATGCTATTTTCTCCAGGTCTAATCCCGTTTCATTTTTA
TATTGCCTTCAACTCACTATGCTAAGCAAAGTAAAAGCCTGTGAACTTAT
TACATAATGAAAATTTCATCTTAATAGACTAAAAGTCATCAACAAACAAG
AATTTTTCTAAATTTACCATCTATTGATTTTATGATCTAAAATTTGAACC
AAAATTTCTAACATTTAAGAAGAGAAACCCTATGACCCCTGCTTTGATAC
TAAAAAGCATTGTTACTGTTTTTGGATTATTACTAATATCATGTGGCCCT
TACGGCAATCCTGAATTAATATGTTTCCCTTTTTTCCTCTATATTTTTAA
TAATACAACTTTTGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_d10.g1 MSMg01no404_d10.g1 CHROMAT_FILE:
MSMg01no404_d10.g1 PHD_FILE: MSMg01no404_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:48 2005
         (462 letters)



>mm_chr5_51154249_51155110
          Length = 862

 Score =  816 bits (422), Expect = 0.0
 Identities = 452/462 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagcagccatcagtcctaatgttcctcttagcttcttatcccaattcagggttctgctt 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 662 taagcagccatcagtcctaatgttcctcttagtttcttatcccaattcagggttctgctt 603

                                                                       
Query: 61  tgccaaaggaacagaaagagttatcatcagtttctaatgacggggcttactgaccagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgccaaaggaacagaaagagttatcatcagtttctaatgacggggcttactgaccagaaa 543

                                                                       
Query: 121 cacatatggcctggtaaaggtaccacctgtgaattaaatcacagtcggtatgaacacttc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cacatatggcctgataaaggtaccacctgtgaattaaatcacagtcggtatgaacacttc 483

                                                                       
Query: 181 taagaatgcagtctccaggacacaatctgagtaggcaaaccatgcatgggattggatctt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 482 taagaatgcagtctccaggacacaatctgagtaggcaagccatgcatgggattagatctt 423

                                                                       
Query: 241 aaccaaaagaatattctgcacctctataatgtgagttaaataagtgaataagcatagcaa 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaccaaaagaaaattctgcacctctataatgtgagttaaataagtgaataagcatagcaa 363

                                                                       
Query: 301 cagagttttgctctaatctcgtatgtttcagcatttcatatcatctacatgctattttct 360
           ||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 362 cagagttttactctaatctcgtatgtttcagcatttcacatcatctatatgctattttct 303

                                                                       
Query: 361 ccaggtctaatcccgtttcatttttatattgccttcaactcactatgctaagcaaagtaa 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 302 ccgggtctaatcccgtttcatttttatattgccttcaactcactatgctaagcaatgtaa 243

                                                     
Query: 421 aagcctgtgaacttattacataatgaaaatttcatcttaata 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aagcctgtgaacttattacataatgaaaatttcatcttaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)