BAC Information

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BAC

Clone NameMSMg01-404G10
Chromosome5 (Build37)
Map Location 28,599,522 - 28,599,761
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp6, Speer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1
Downstream genePrr8, Shh, LOC100039258, Rnf32, EG664949, Lmbr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404G10.T7 (MSMg01no404_g10.b1)MSMg01-404G10.TJ (MSMg01no404_g10.g1)
ACCAG503079AG503080
length790754
length of high quality
(start - end)
249 (57 - 305)240 (63 - 302)
definitionCHROMAT_FILE: MSMg01no404_g10.b1 PHD_FILE: MSMg01no404_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:04 2005CHROMAT_FILE: MSMg01no404_g10.g1 PHD_FILE: MSMg01no404_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCGCTAAACGACTCCTAATCACATAGATCCGCGGAATTCACTCTGTTC
CGTACATAGGCCTTGAACTTGGTAATCTTCCTGCCTCATCCCCTCAGCTG
GGTTTGCAGGCCTGTAGAGTCAGACACCACTCATTAGTATCTATGAAATG
TGTAGTAGCATTATACGGTATTATGTAGTGGCACCTTTGTGTATATATAT
TCTTATTGCTAAAAAAAAATGCCAAGAACCATCTGGCCCTGTTGAGTTGT
GCATTGTGCTTGCTTCTGGCACTCAGGCTTCAATGCTGATAGCTGTTGCT
GACTCCTTTTTAATCAGAGTGGTGGCTGTGGAAGGCTGGGGTGGTCAAGG
TGACTTTTTGCCTTAATGACAGTGGAATGTGCCATACCTGTCCACTCTTC
CCTTCATGAACATCCCCTGCAGTTTATAGTGTTGTTTGAGAATATTTCTT
TCAACACTGAATTAATCCTCTCCAGCTCTGTTGCCACTTCTCAACTAAGT
TTCCATGACACCCCGACTCCTCGGGTGTCCCAGGTTTAGATTTTGTCTTA
AGAAACTTACTTTCCGGGGTTTAAGTTTATGGCTCTCCAGTTAGGTGTTT
TTCCCTCAATGTATTGAAAATTCTTTGTTTGCATTCCTTTTAGACCCTGG
TTTTTTCTCCCCGTCCTTTCCTTGACTTTATATCTTTCTCCGTTTTAAAA
ATTCTTTTCTCGTTTCTGTTCTGTGTGCCTTCCGCTTCTCTTATTCCCTT
ATATTCTCCATTATCATTATCATTTCTTGTCTCTCTTGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TTCGCGAAATTCAGCAGTCCAGCAGCCCAGCAATCCAGGAATCCACCAGT
GCAACAATCCAGGAATCTACCAGTCCAGCAGTCCAACAATCCCACAGTCC
AGGAATCTAGCAGTCTAACAGTCCAGTAGTCCAGCAGTCTGGAATCAAGC
AGTTTAGCAATCTAGCAATCCAGCAATAGCAAGCACAACAGTATTAGGGG
GCAGCAGCAGTGGGGAGCAACAGCTGCTACAGGCCCTCTGGGGTCTCTCG
TATTTATACTCTTCCAGAGTCCCCTGAACTTATCTATCTGCAACTGGCAA
AAATCATGCCTTTCCCTAGAGCATGAGACAATCATAGTTAATGTCTGTGG
ACAAACTGAAGCAGCTGCATATCCCATACCCAGGAATAAAACACAAACAT
ATTCATATAACATAACTGGGTTTTGTTGTTGTTGCCTTGGTTTGGTTTTG
GCTATTTTTTTTTTATTTTTTTCTTTTTATTTTTATTCTCCCCCCCCCCT
TTTTTTTAAATTTTATAAATTACCCCTTCTTTTTGCCTTGCCCCGTTTTT
TTTTTTCTCTCCCCTTTTTATTTTTTTTTCTTATTTTTTTTCTTTTTTTA
CTTCCCTCCCCTATTTTTAATCTTTTATTCTATCCTATTTTTTCTTCTTA
TTTTATTTTCCCTCTTTTTTCTCCCTTTTTCCCTTCTTTTTCATTTTTCT
TCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_g10.g1 MSMg01no404_g10.g1 CHROMAT_FILE:
MSMg01no404_g10.g1 PHD_FILE: MSMg01no404_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:04 2005
         (240 letters)



>mm_chr5_28599322_28599961
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagtccagcagcccagcaatccaggaatccaccagtgcaacaatccaggaatctacca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 201 agcagtccagcagcccagcaatccaggaatccaccagtgctacaatccaggaatctaccg 260

                                                                       
Query: 61  gtccagcagtccaacaatcccacagtccaggaatctagcagtctaacagtccagtagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccagcagtccaacaatcccacagtccaggaatctagcagtctaacagtccagtagtcc 320

                                                                       
Query: 121 agcagtctggaatcaagcagtttagcaatctagcaatccagcaatagcaagcacaacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agcagtctggaatcaagcagtttagcaatctagcaatccagcaatagcaagcacaacagc 380

                                                                       
Query: 181 attagggggcagcagcagtggggagcaacagctgctacaggccctctggggtctctcgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagggggcagcagcagtggggagcaacagctgctacaggccctctggggtctctcgta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)