XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTTT
TAAATTTTCATAAAGGAAAACACCCAAATTGCTAACCAACTTAACATATA
AAAAATGCAAATAAAATTTCAGAAAAAAGTAAAGAAAAACAAAACAAAAA
CCAAAAGCCCTTCAACAATCCTTATTAAATTCAAATGGGATATGTTCTTT
TTCTATACAAACAGGATTTAACCTACAAGGCTTTTGAGGAATAACACTGC
ATACCCTTAAGGATTTTTCATCCTACCCCCTCACAAAAGTTTTGAAGGCC
AGGCAATGAGAATATATTTTCTGATTAGACACTAATTAGGTTATACCATG
TATTCGGCACCTGTTTATCCAATAGGGAGAGCTTGTGGGTTGAACTTTTA
CTCCCCTAAACATTTCTCAGTATTAAGGCTCATGAGAGAATAATTAATCT
TAGTTCCCTTGATATCTGCGGAAAAGTAAAATTAGTCATCTGAAGCTCTT
CCCAGAAACAATATGTAATGTTAAAAACTGAGATAAACAGAATAAAAATG
AATTCCCAAACAAACACTGTCATTTATTCAATAAAACTACGTTTTGAACA
GAATAAGCACTAAAAAAATAACTTCACACCTGTTACTAACTCCTGCTGAA
GGCCCGAAATCTGGGGGCATCACCCCGGTATTGTGGGTCCCACACCTTTT
ATAATCGGTTTCTTGAAGAAAAAAAAACTTTTTTTATAAAACACACCCCT
GTTTCATTTTTTTCAACATCCAAC

TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGTTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGATATAGTACTACTGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCTCCAACTGGTAAGAAGGACACAT
GCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAG
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAANATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGTATCATCCTTATTGAGGGAACA
CATTCTCTAAGGAATTCACACAATATGTTCTTCCCTGCTAATTGGTATAT
TTCCCCCATAAACTCCCCCACCTCCTAATTATATAATAACATTTCTTTAA
ACCCTTGTAAACTCCCAACAAATTGTTTAGTGAATTTTGGGGACCTTTTT
GTTCACCTCCTCTAATTTGGTATCAAAAATCCN

Query= MSMg01no404_l09.b1 MSMg01no404_l09.b1 CHROMAT_FILE:
MSMg01no404_l09.b1 PHD_FILE: MSMg01no404_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:28 2005
         (500 letters)



>mm_chr5_12696409_12697308
          Length = 900

 Score =  899 bits (465), Expect = 0.0
 Identities = 488/497 (98%), Gaps = 4/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttttaaattttca--taaaggaaaacacccaaattgctaaccaacttaacatat 63
           ||||||||||||| |  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttttaaaat--caaataaaggaaaacacccaaattgctaaccaacttaacatat 263

                                                                       
Query: 64  aaaaaatgcaaataaaatttcagaaaaaagtaaagaaaaacaaaacaaaaaccaaaagcc 123
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 aaaaaatgcaaataaaatttcagaaaaaagcaaagaaaaacaaaacaaaaaccaaaagcc 323

                                                                       
Query: 124 cttcaacaatccttattaaattcaaatgggatatgttctttttctatacaaacaggattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcaacaatccttattaaattcaaatgggatatgttctttttctatacaaacaggattt 383

                                                                       
Query: 184 aacctacaaggcttttgaggaataacactgcatacccttaaggatttttcatcctacccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacctacaaggcttttgaggaataacactgcatacccttaaggatttttcatcctacccc 443

                                                                       
Query: 244 ctcacaaaagttttgaaggccaggcaatgagaatatattttctgattagacactaattag 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 444 ctcacaaaagttttgaaggccaggcaatgagaatatattttctgattagacattaattag 503

                                                                       
Query: 304 gttataccatgtattcggcacctgtttatccaatagggagagcttgtgggttgaactttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttataccatgtattcggcacctgtttatccaatagggagagcttgtgggttgaactttt 563

                                                                       
Query: 364 actcccctaaacatttctcagtattaaggctcatgagagaataattaatcttagttccct 423
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 actcccctaaacatttctcagtattaaggttcatgagagaataattaatcttagttccct 623

                                                                       
Query: 424 tgatatctgcggaaaagtaaaattagtcatctgaagctcttcccagaaacaatatgtaat 483
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgatatctgcagaaaagtaaaattagtcatctgaagctcttcccagaaacaatatgtaat 683

                            
Query: 484 gttaaaaactgagataa 500
           |||||||||||||||||
Sbjct: 684 gttaaaaactgagataa 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)