Query= MSMg01no404_o06.b1 MSMg01no404_o06.b1 CHROMAT_FILE:
MSMg01no404_o06.b1 PHD_FILE: MSMg01no404_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:42 2005
(246 letters)
>mm_chr5_4498063_4498708
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Plus
Query: 1 aaaagtgaattttaaaaatcaaatccaggcataggaatcaaagttctgcctggattagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagtgaattttaaaaatcaaatccaggcataggaatcaaagttctgcctggattagaa 260
Query: 61 gccgtgatgccttggaaatcgccaccgaagagcaacacacctcttttcttcattgctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccgtgatgccttggaaatcgccaccgaagagcaacacacctcttttcttcattgctgag 320
Query: 121 tcccatcccacactcaggcctttggtggcagagttgaaatgttgcaggctgagcatatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccatcccacactcaggcctttggtggcagagttgaaatgttgcaggctgagcatatag 380
Query: 181 ttgcagcttatgtatgctctagcatgtaagtgattgtggcattgagaaagtcccttactc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcagcttatgtaggctctagcatgtaagtgattgtggcattgagaaagtcccttactc 440
Query: 241 atgccg 246
||||||
Sbjct: 441 atgccg 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_o06.g1 MSMg01no404_o06.g1 CHROMAT_FILE:
MSMg01no404_o06.g1 PHD_FILE: MSMg01no404_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:42 2005
(346 letters)
>mm_chr5_4668986_4669731
Length = 746
Score = 630 bits (326), Expect = 0.0
Identities = 341/346 (98%)
Strand = Plus / Minus
Query: 1 gttttcagagacttcctgttttctacttagatgttggctgctcccacttagcatcacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gttttcagagacttcctgttttctacttagatgttggctgctcccacttagcatcacttt 487
Query: 61 taagaaacccaggactttcaattgttcctagaagcttgggttgccacccatagcatactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 486 taagaaacccaggactttcaattgttcctagaagcttgggttgccacccatagtatactg 427
Query: 121 gtaactggcccagaagatgagtttcaaaccattcagttactcttatgcctagaaacatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtaactggcccagaagatgagtttcaaaccattcagttactcttatgcctagaaacatga 367
Query: 181 atttgtcctgctggatgtgggacttttttgggacacatgacttcttttttccagtttcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atttgtcctgctggatgtgggacttttttgggacacatgacttcttttttccagtttcta 307
Query: 241 ccttttttatctgtcatcttgtgccaatctcacatacatatgtatataatgatctatatc 300
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccttttagaactgtcatcttgtgccaatctcacatacatatgtatataatgatctatatc 247
Query: 301 taatctatatcatttatatctgtccatctatctacacacacccaca 346
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 246 taatctatatcatttatatctgtccatctatctacacacacacaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
