BAC Information

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BAC

Clone NameMSMg01-404O14
Chromosome5 (Build37)
Map Location 42,984,168 - 42,984,554
singlet/doubletsinglet
Overlap genenone
Upstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404O14.T7 (MSMg01no404_o14.b1)MSMg01-404O14.TJ (MSMg01no404_o14.g1)
ACCAG503466AG503467
length7531,951
length of high quality
(start - end)
509 (57 - 565)---
definitionCHROMAT_FILE: MSMg01no404_o14.b1 PHD_FILE: MSMg01no404_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:44 2005CHROMAT_FILE: MSMg01no404_o14.g1 PHD_FILE: MSMg01no404_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTCACTATTTCGAGAGATCCGCGGAATTCTTTTGTTA
TCGATACATTTTTTATTCACTCAGCATTTCATACTTATAAACCGTGAGAT
ATGATAATAAGCATGCGTCATTCCCCATTCCTCTCTCCAACTCTTCTCCT
GTGCCACCAACACTTCTCCCCTACTTCACATCTTTTTGTCATTTTGTTTT
TGATAACATACTTATTGCTATGCATGTGTGCATGGGTACAGGGCACCCAC
CAGAGCATGGCAACATACCATTGGCCACACCTTCAAAAAAGAATGAAGGG
TTAGCTGATGGTTTAACCAAAGCTTGAGTTGTATTAAATCCTGTGGAATT
CTATATTATTAGCACAATTTCTTGCATAAAGCAGGTGCTCAATAAATGTA
TTTCAAAGATTGAATGGAAGAAAAGGAAGTAGAAACACATTTATGGATGG
CAGGAATTCTAAATATGGGCATGAGATGGAAAACATCATTTGGTTGATGA
AGAAGTAAATACACAGTTGTGGTCTTACGAAGTTTTAATGGAAGGATCAT
ACATAATCCCTCTTGCCTAGTAGAGTTATTGCCATCATAATGTCCAGTTG
CAATACATTTGTGATGATGCGTAAATAAACTTACCATGCCTCCCGTTGAA
TGAAAGAATAGCTTGCAAAAAATAAATTATGTTATTTCTGGTTTATGTAT
TTGCTACCCTAACCTGTGTTTATTTTAAGTATACCCCCACTAACTAAAAC
CGG
TTTTCCTTCCCCCTCCTGTNCTCGTTCTTCNTGCTCTNGCGTGTCTTTCT
ACCCTGCATATGCATTAGTACACGTTGTAGATGGTCTNATCTGNTNATAT
ACGCTATGCACTCCCCCAGCTGAAGCGTACNACTCCTGTCGNTNTCGAGT
GTGTCTATTCTCGTTANATTGTCGCTCGGTCTCTACTAGTACTTACCGAT
GCTCACCTGCATTACTATTTGTCCTCTTACTTCCGTCGTCTTCTATANAT
CACTGACGTGCATACTCGCGCTGTGCTGACNCTGTGAGCGATCGTGNTTA
GAGNAGNAGGNAGAAGAGCGGATGCGCGCGCGACGAGACGATATCGACGA
AGACCAGATAAAGATCTAATACATGATATACATACTACATAATGAATGAA
TATAAGCGGCGATAACAGACGCATAAAGACTAGACATTATCCACAGCGCC
GCAATATAGACTGTCATACTNCTACAATATACGCCCNACANCGANAGAGC
TACAACGACACATAGGACAATTACAGACAATACAGCTACATACGCACTTC
TTACACATCTCTTACGTTCTCACAGATACCTCACGTGTAATATGCGAGCA
TGTGTACATACTCATGTATCGAGACACCGTGATGATCTTATATGTANGCG
GAGAACGGCGCTCTACATGAATAAGTATATATATCCAGCGCCGCATACAT
ATAATAACGCAGGCGACGCGCACTACTGTATNTNTCATATATGAGTATAT
ATAATTAATGCGGCGGCCCTCACGGCACGATAATGNAATATGATATATGC
GAGCGTCNGGCGTGGAATTAAGTTTGACTCGTGGCGCTGTTTGTATATCA
TCTCACAATTATATATAATATATGCCTCCTCGACAATATCGAACATCGAC
TCCTCTCGCAGAATAATGCATATGTNAGCGCCGGTTATATGGTCTACATA
TATATACTGACTGAGTCAGTCACACTATAACACTGTCATCTACACACNCG
GCGCGCGANTNAGCATCTGTGTCAGGTAACTTATCATAGCGAGACTATTC
TGACTCTCAGANATCTACTGTGCGTCGTNTGGACTAAAGTATATCTCTCT
ACGTCATCGCATNGCAGCTGAGTATGTGTGCACGCGTACATACAATANTA
CTCATCACTACTCCCGGCTGCTGTGCATNATAATGCNCTCATCCTCATCA
CTNTNTNCCTACGTGCAGCAGATGAGCTGATGATGATCGACGAGAGTNCG
TGTGCTGCTGCTGATGGGTACGACGTNCTGCAGCNTGCTGTGAGCATNAC
GTNTGATACTGATATGAAACTGTGTTGATCTCGCACGCGCCTGTAGCGAG
NCGCGAGCGCGTCATCTACGTACAAGTGAATATAGTCACATGATATCTAT
AAGATGCNTTGTGCAAATTGATAGCATACTATCGTNTACCGGCAGCCAGC
ACTGCCAGATGACTNAAATGTCACNCGCGTCCAGNCGCGTCGACGGTCAG
CNGCTATTAATACANATCATGTAGTAATACGTCATGATCGNCGGCGTCTC
GTCGGCGCGCACATCTAATTTNATATACTAGTATATCATATAGCATACAT
NTCGTGCGCATGTCATGATATTGGTATACTGNTATGNCAATAGANTCGGC
GTGTGNTGAGTAGNGTGACGTNGTGCNTGCGTAGATCGTGNANGCGCGAA
GNATANTACATATCAACGATATCTGTCACTCTACCGTACTACTCGTAGCG
TCAGCACTGCACTACTGCATGAGATAGATGNATGTAGAGATGCGAATATC
GTGNTACAGTCNAGGTTCTACTTGGTCGGTGACACGTCGTCTAGCCNCTG
ACTATTAGTCGCGTACACTATACGAANCCTGCTGTCGTCGNTACGCTTGA
TCTCGCTGCATCCTCTGCNAAGTAGATAGCAGCAGTACGACTACTACNTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_o14.b1 MSMg01no404_o14.b1 CHROMAT_FILE:
MSMg01no404_o14.b1 PHD_FILE: MSMg01no404_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:44 2005
         (509 letters)



>mm_chr5_42984156_42985064
          Length = 909

 Score =  704 bits (364), Expect = 0.0
 Identities = 382/388 (98%), Gaps = 2/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   attttttattcactcagcatttcatacttataaaccgtgagatatgataataagcatgcg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13  attttttattcactcagcatttcatacttataaaccgtgagatatgataataagcatgcg 72

                                                                       
Query: 62  tcattccccattcctctctccaactcttctcctgtgccaccaacacttctcccctacttc 121
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 73  tcattccccattcctctctccaactcttctcctgtgccactaacacttctcccctacttc 132

                                                                       
Query: 122 acatctttttgtcattttgtttttgataacatacttattgctatgcatgtgtgcat-ggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 133 acatctttttgtcattttgtttttgataacatacttattgctatgcatgtgtg-attggg 191

                                                                       
Query: 181 tacagggcacccaccagagcatggcaacataccattggccacaccttcaaaaaagaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 192 tacagggcacccaccagagcatggcaacataccattggccacaccttcaaaaatgaatga 251

                                                                       
Query: 241 agggttagctgatggtttaaccaaagcttgagttgtattaaatcctgtggaattctatat 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 agggttagctgatggtttaaccaaagcttgaggtgtattaaatcctgtggaattctatat 311

                                                                       
Query: 301 tattagcacaatttcttgcataaagcaggtgctcaataaatgtatttcaaagattgaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 312 tattagcacaatttcttgcataaagcaggtgctcaataaatgtatttcaaagattgaatt 371

                                       
Query: 361 gaagaaaaggaagtagaaacacatttat 388
           ||||||||||||||||||||||||||||
Sbjct: 372 gaagaaaaggaagtagaaacacatttat 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)