BAC Information

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BAC

Clone NameMSMg01-405C21
Chromosome5 (Build37)
Map Location 84,895,866 - 84,896,186
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405C21.T7 (MSMg01no405_c21.b1)MSMg01-405C21.TJ (MSMg01no405_c21.g1)
ACCAG503672AG503673
length790798
length of high quality
(start - end)		461 (48 - 508)401 (79 - 479)
definitionCHROMAT_FILE: MSMg01no405_c21.b1 PHD_FILE: MSMg01no405_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:05 2005CHROMAT_FILE: MSMg01no405_c21.g1 PHD_FILE: MSMg01no405_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAACAGGTTACCATGGATAGTTACCATGGATAGCTTGCCTGGG
TTAAATTCAATGAGTCATAAAATAAAGCCAAATTCTTGAATGTGGTAAAG
AAACTTTTTTTCAATAACTTTTTGATGTACTCATTTTATATCCCAATATC
AGTCCCCCTCTCCCCCCATTTCCCCCTCTCAGAGCGCCTCCTCTCTATTC
CTTCTCCCCCTCTCCTCTGAGAAAGGGAACCCCCCAACCCTGCGAGTATC
ACCCCAGCCTGGCACATCAAGTCACTGCAGAAGTAAATGCATCCTCTCCC
ACTGAGTTAAGAAAAGGTGGTCCAGTTAGGGGAATGGGATCGACAGGTAG
GCAACAGATTCCAGAACAGTCCGTGCTCCATTTGGTTGGGGGACCTGCAG
GAAGACCAAGCTCTTCATCTGCTACTTGCAGGGGTCCTAGGTCCAGCCCA
TGCTTGTTCTTTGGTAGATGGTTCAGTCTGTGGGAAGCCCCAAAGATCTT
TGAAAGGCTGGGGAAGAGATAAAAGAAGATGTTGGTAAAAAATTAAGCAC
ATTTTTGTTACATGGATAAAAATGTCCAAGAACACCATTCTTAAAGGGAG
GAGAACGCCCGAAAAAGCCGTTTAACTTTGTATTCTTAAAAACGAAAAAC
GGGGAACTGAAAGGTTTGGACCCCTTAACCCTTTTTTAAAAAATAAAAAA
AACCTCTCCCCAAAAAAAAATTTATTTTTGTGTGTGAAAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATGGA
TGGAACTAGAAAATATCATCCCGAGTGAGATAACCTAATCACAACAAACA
AACATACAAACAAACAAAAAAACAAAAACAAACAAAAAATCACACATGGT
ATACACTCACTGAAAATTGGACATTAGCCCAGAAGTTCAGAATACCCAAG
ATACAATTCACAGACCACATTAAGCCCAAGAAGAGGGAAGACCAAAGTGT
AGATACTTCGGTCCTCCTTAGAAGAGGAATCAAAATACCATTGGGAGGAG
ATCCAGAGACAAAATGTGGAGCCGAAACTGAAGGAAAGATCATCCAGAGA
CTGTCCCAACTGGGGAAACCAACCCATATACAGTTACCAATCCCAGACAC
TATTGTGGATGCCAAATGCTTGCTGACAGGAGCCTGATATTGTCTCCTGA
GAGGCTCTGCCAGTGCCTGACCAACACCAAAGTAGATGCTCAGAGCCATA
TATTTGAGAGAGGACAGGGTCCAATGGAATAGTTAGAGAAACAACCCAAG
CCAGTTGAAGGGATCCCAAAAAAAGGAACAACAATGTGGAGGAAACCTGA
ACCCCCCCCAGTTCCCAGGGGATAAAACCCCCCCCAATAAGAAACCATGT
GGGGGATTCTTGGGTTCTTCCCCTTTTTTACTCGAAGAAAAGCCTCCGGC
GGCACCCTTTGGAAAAAAAAACCCTTTGGCCCCCGGGAAGATATTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_c21.b1 MSMg01no405_c21.b1 CHROMAT_FILE:
MSMg01no405_c21.b1 PHD_FILE: MSMg01no405_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:05 2005
         (461 letters)



>mm_chr5_84895866_84896726
          Length = 861

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaacaggttaccatggatagttaccatggatagcttgcctgggttaaattcaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattccaacaggttaccatggatagttaccatggatagcttgcctgggttaaattcaat 262

                                                                       
Query: 65  gagtcataaaataaagccaaattcttgaatgtggtaaagaaactttttttcaataacttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcataaaataaagccaaattcttgaatgtggtaaagaaactttttttcaataacttt 202

                                                                       
Query: 125 ttgatgtactcattttatatcccaatatcagtccccctctccccccatttccccctctca 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatgtactcattttatatcccaatgtcagtccccctctccccccatttccccctctca 142

                                                                       
Query: 185 gagcgcctcctctctattccttctccccctctcctctgagaaagggaaccccccaaccct 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gagctcctcctctctattccttctccccctctcctctgagaaagggaaccccccaaccct 82

                                                                       
Query: 245 gcgagtatcaccccagcctggcacatcaagtcactgcagaagtaaatgcatcctctccca 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gcgggtatcaccccagcctggcacatcaagtcactgcagaagtaaatgcatcctctccca 22

                                
Query: 305 ctgagttaagaaaaggtggtc 325
           |||||||||||||||||||||
Sbjct: 21  ctgagttaagaaaaggtggtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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