BAC Information

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BAC

Clone NameMSMg01-405H08
Chromosome5 (Build37)
Map Location 87,415,678 - 87,416,278
singlet/doubletsinglet
Overlap geneLOC665424
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1
Downstream geneLOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405H08.T7 (MSMg01no405_h08.b1)MSMg01-405H08.TJ (MSMg01no405_h08.g1)
ACCAG503885AG503886
length769741
length of high quality
(start - end)		512 (49 - 560)600 (81 - 680)
definitionCHROMAT_FILE: MSMg01no405_h08.b1 PHD_FILE: MSMg01no405_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:27 2005CHROMAT_FILE: MSMg01no405_h08.g1 PHD_FILE: MSMg01no405_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:27 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCTTACTCTTTCGAACAAATAGTCAAATTTAATATGGCCACC
ACAAAAAGAGCATGGATTTACTGAATACATTGGAAACAAAATTACCCCAG
TGTTTAGCTACCCAACTATTAGGAATCTAAAGAAAGAGTAAACAACATTA
TAAATGTTCAAAGACTTGGAAATTATATGTATTCATATTTGATAATTACA
TATAATATTTCTATACATGCATTTACATGTATAGTTATTCTACTTTGGGT
AATAAGTGAGAATTATTTAAAGAATTATTAATAATTTTAGAAAGTTTGAG
TCACTGAATTGAAATATTTTATATATGTTTTAGCTTCATTATCCTGTTTC
TTGATTTGAACCTATTTATGGAAACTATGTCCTTTTGTTTAGCAAGAGAA
GAAAATTCCCAGCATCAAATTATACTAAACTAACTTCTCATGCAATAAGT
CATGGTGTAGATTGCAGTCTTCATTGACAGTTAAAGCTTTTTTACAATGT
ATATTTATGTTTACTGTTGTTGTTTTCCCCATCAGACTAAAGATCAGAGG
AAAGCTAGTATTACCTTTGAGAGAAACTACCTTGACTAATAGNAATTTTA
CTAAAGCACAGTACTCCCCAAGGGCCATTAATGACTGTCTTCTCTGGAGG
GGGGAAAACCTGACCTGGAACTTGTTGAAAACTAAAAACCGGACCCTCTG
GCCTTCCGTTGACAAACAA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTTGAGCCATATTTTA
CAAATTGTTGAGAGAAAGTAAGGAGAGACAAATTGTGTGGTGTTTGTGTT
ACATGTAAGACCAAGAAGTGAAATAGACTCAGAATTCTTTTAAGCTTTAC
AAGAGCAGGATGTCATGTCAGATATATTTTCTCTAGTAGGAGTTTCTCCT
CTTCTCTTCTACCTCTATCTCCTAATTTTTATTTATACCTAGATTCCTAT
TCTGAAAAAACTTGTTGAGTTAAGCTTCTTCCTTATACAAAATTTCCACC
ATAATTGTCCCCACAATGAAAGCAATCCAATCCTGTTTCTGGACCAGGAG
ACTGTGTATGCAAGAACCAGCAGCACTTTCTCCTGTTATTTGACTTTGAA
CTTTCTGATTATGTACATTTGATTTTTGGCAAGCTTTGAAACTACCAATA
GTATTTTCTGTGTATGGTATGAATTTAATACCGTCTTTCATTCCTTGATT
ACTATTTGTGCAATATCATATATTATTATAGAGATAAAATATTTTTACCA
AAACTTGTATAGTATTAACAAATATGGGTAAATGTTTAAACATTCATTAG
TATTAAGGTTTATGATTACTTTATTATGTACATTCTATGGTATTTAGATA
TACTGTCCTTGCTACAAATAGATAAATACTTGGAATATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_h08.g1 MSMg01no405_h08.g1 CHROMAT_FILE:
MSMg01no405_h08.g1 PHD_FILE: MSMg01no405_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:27 2005
         (600 letters)



>mm_chr5_87415478_87416478
          Length = 1001

 Score = 1131 bits (585), Expect = 0.0
 Identities = 597/601 (99%), Gaps = 1/601 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagttgagccatattttacaaattgttgagagaaagtaaggagagacaaattgtgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcagttgagccatattttacaaattgttgagagaaagtaaggagagacaaattgtgtgg 742

                                                                       
Query: 61  tgtttgtgttacatgtaagaccaagaagtgaaatagactcagaattcttttaagctttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtttgtgttacatgtaagaccaagaagtgaaatagactcagaattcttttaagctttac 682

                                                                       
Query: 121 aagagcaggatgtcatgtcagatatattttctctagtaggagtttctcctcttctcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagagcaggatgtcatgtcagatatattttctctagtaggagtttctcctcttctcttct 622

                                                                       
Query: 181 acctctatctcctaatttttatttatacctagattcctattctg-aaaaaacttgttgag 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 acctctatctcctaatttttatttatacctagattcctattctgaaaaaaacttgttgag 562

                                                                       
Query: 240 ttaagcttcttccttatacaaaatttccaccataattgtccccacaatgaaagcaatcca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaagcttcttccttatacaaaatttccaccataattgtccccacaatgaaagcaatcca 502

                                                                       
Query: 300 atcctgtttctggaccaggagactgtgtatgcaagaaccagcagcactttctcctgttat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcctgtttctggaccaggagactgtgtatgcaagaaccagcagcactttctcctgttat 442

                                                                       
Query: 360 ttgactttgaactttctgattatgtacatttgatttttggcaagctttgaaactaccaat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgactttgaactttctgattatgtacatttgatttttggcaagctttgaaactaccaat 382

                                                                       
Query: 420 agtattttctgtgtatggtatgaatttaataccgtctttcattccttgattactatttgt 479
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agtatttcctgtgtatggtatgaatttaataccatctttcattccttgattactatttgt 322

                                                                       
Query: 480 gcaatatcatatattattatagagataaaatatttttaccaaaacttgtatagtattaac 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatatcatatattattatagagataaaatatttttaccaaaacttgtatagtattaac 262

                                                                       
Query: 540 aaatatgggtaaatgtttaaacattcattagtattaaggtttatgattactttattatgt 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaatatgggtaaatgtttaaacattcattagtattaaggtttatgattactttaatatgt 202

            
Query: 600 a 600
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space:   584690
Effective search space used:   584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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