BAC Information

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BAC

Clone NameMSMg01-405N23
Chromosome5 (Build37)
Map Location 90,735,176 - 90,894,047
singlet/doubletdoublet
Overlap geneAnkrd17, Alb1
Upstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
Downstream geneAfp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405N23.T7 (MSMg01no405_n23.b1)MSMg01-405N23.TJ (MSMg01no405_n23.g1)
ACCAG504201AG504202
length811777
length of high quality
(start - end)		431 (72 - 502)379 (76 - 454)
definitionCHROMAT_FILE: MSMg01no405_n23.b1 PHD_FILE: MSMg01no405_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:59 2005CHROMAT_FILE: MSMg01no405_n23.g1 PHD_FILE: MSMg01no405_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,735,176 - 90,735,606)(90,893,672 - 90,894,047)
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCACAGTAGTTGACTTAAGGTTATAGGTTGCAGGGAGGTGGCTTA
TAAAGTCCCCTACATTACAATGTGTCATTGCTAAGCCTAATGAAAACTTA
TCAAGAAAATTGTATTTTACTCAAAATGAGGGATTTTCTTTCTCATTATC
TAAATTCCTTGTTACAAACCTGGCTAAAAGATACAGGAGTATAGAACAAC
AATGTCCTATATCATAGGAAAATACACACAGTGGGGAAAGGAGTAGCTGT
GCAAAGCCTATGAGTTGGCTAAGTAAAGGCATTTGCAGCCGAGACTGGAG
GGCTCTGACCAGAGCCCATGTGTCGGGAAGAGAGAATCATTTCCCACAAG
CCGCCCTCTAACTGCCACATGTTCATCATACCTGCTCCTCCACCCCATAT
CAATAATTTATTCCACATATGTGTTTGTGTCTACATGGTTTCTATGCTCT
GTGAAAACAAATGTTAACTTTCAACCAACAAGTATAATAATCAACCTTTA
AGTAATCATGAAACTGTAGTAATTAAAACAGAAAAAAAATTGAAAATTGC
CAGCTTAGAAAGCAGTTTGAGTTTCAATCCCCGCGATCACCAGTTGTGCA
AACCCCCTGAACTCCCAAAGAACATTGGGAGAAACCACCCCTTGGGTTGT
TATCCTGTGGGGCCACCCACCCCCCTGTATATTTTTTAAAAAAATTTTTA
ATGCCCCCAGTTATCGGAGTATTTCTCCCTCTTTAAAAGCTTATGTTTTT
GTTATAAAAAA

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCAGGTGTTGTGTGTGTCTTTC
CAGGAGTTTACCTTCGGGGTCAGGCAGCTTTCCTTGTCAGCCTCTGCACA
ACACTGGGTCAGAATCTCATTGTACTGCTCAGCATAGTAAAGAAGTTCTG
GGGCATAGAAATAAGGATGTCTTCTGGCAACTTCATGCAAATAGCTGAGT
TATGGGAAAGAAGAAGAAGAAAACAGGCAGTTATTCCCCACAGAACAGTA
CTACAGAAATGATTAGAATCAACCCACACCCTTGGATACACATGGGATTT
GTAATTGACCGGTTTCACTCAGTGTGGTCACCCATGAGTGATGGACTTTG
TCTGTTGTTAAGTGAGCAAAGAGAGATATGTAGATGTGTGTGTGTGTGTG
TATGTGCGTGCGTTCTCGTGGCTCTTTGCCGTTTTTTTTCCTTTTTGCGT
GTTTTCTGCGTTGTGCGATGCCTGTGTCGCGTTGGCGGTGTTCATCTGTG
CCGCGTTTTGTTTCCCGTGTTTTCTTTTCGCGTCTTTTCTGTCGTCTTTT
GTCGCCTGGTTGCTGCCTCCCCTCCTGTTGTTCTTGCCGCCGTTTTTGCG
TTTGCGCGGCTGTTTGCTGTCCTCGTTCCCCGTTGCCGTATCCGCCCTAG
TTGGTTGGCTCCGTTGTTTCTCTCCCGATCGTCGTTTTTCACCCGCTCTG
TTGTTTTGTTCTCTTTTTGCCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_n23.b1 MSMg01no405_n23.b1 CHROMAT_FILE:
MSMg01no405_n23.b1 PHD_FILE: MSMg01no405_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:59 2005
         (431 letters)



>mm_chr5_90734976_90735806
          Length = 831

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggttataggttgcagggaggtggcttataaagtcccctacattacaatgtgtcattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggttataggttgcagggaggtggcttataaagtcccctacattacaatgtgtcattgc 260

                                                                       
Query: 61  taagcctaatgaaaacttatcaagaaaattgtattttactcaaaatgagggattttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagcctaatgaaaacttatcaagaaaattgtattttactcaaaatgagggattttcttt 320

                                                                       
Query: 121 ctcattatctaaattccttgttacaaacctggctaaaagatacaggagtatagaacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcattatctaaattccttgttacaaacctggctaaaagatacaggagtatagaacaaca 380

                                                                       
Query: 181 atgtcctatatcataggaaaatacacacagtggggaaaggagtagctgtgcaaagcctat 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 atgtcctatatcataggaaaatacacacagcggggaaaggagtagctgtgcaaagcctat 440

                                                                       
Query: 241 gagttggctaagtaaaggcatttgcagccgagactggagggctctgaccagagcccatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttggctaagtaaaggcatttgcagccgagactggagggctctgaccagagcccatgt 500

                                                                       
Query: 301 gtcgggaagagagaatcatttcccacaagccgccctctaactgccacatgttcatcatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcgggaagagagaatcatttcccacaagccgccctctaactgccacatgttcatcatac 560

                                                                       
Query: 361 ctgctcctccaccccatatcaataatttattccacatatgtgtttgtgtctacatggttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctcctccaccccatatcaataatttattccacatatgtgtttgtgtctacatggttt 620

                      
Query: 421 ctatgctctgt 431
           |||||||||||
Sbjct: 621 ctatgctctgt 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_n23.g1 MSMg01no405_n23.g1 CHROMAT_FILE:
MSMg01no405_n23.g1 PHD_FILE: MSMg01no405_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:00 2005
         (379 letters)



>mm_chr5_90893472_90894250
          Length = 779

 Score =  712 bits (368), Expect = 0.0
 Identities = 374/376 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcaggtgttgtgtgtgtctttccaggagtttaccttcggggtcaggcagctttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaagcaggtgttgtgtgtgtctttccaggagtttaccttcggggtcaggcagctttcctt 517

                                                                       
Query: 61  gtcagcctctgcacaacactgggtcagaatctcattgtactgctcagcatagtaaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtcagcctctgcacaacactgggtcagaatctcattgtactgctcagcatagtaaagaag 457

                                                                       
Query: 121 ttctggggcatagaaataaggatgtcttctggcaacttcatgcaaatagctgagttatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttctggggcatagaaataaggatgtcttctggcaacttcatgcaaatagctgagttatgg 397

                                                                       
Query: 181 gaaagaagaagaagaaaacaggcagttattccccacagaacagtactacagaaatgatta 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 396 gaaagaagaagaagaaaacaggcagttattccccacagaacaatactacagaaatgatta 337

                                                                       
Query: 241 gaatcaacccacacccttggatacacatgggatttgtaattgaccggtttcactcagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaatcaacccacacccttggatacacatgggatttgtaattgaccggtttcactcagtgt 277

                                                                       
Query: 301 ggtcacccatgagtgatggactttgtctgttgttaagtgagcaaagagagatatgtagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggtcacccatgagtgatggactttgtctgttgttaagtgagcaaagagagatatgtagat 217

                           
Query: 361 gtgtgtgtgtgtgtgt 376
            |||||||||||||||
Sbjct: 216 atgtgtgtgtgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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