BAC Information

Click to search

BAC

Clone NameMSMg01-406A12
Chromosome5 (Build37)
Map Location 88,496,977 - 88,497,362
singlet/doubletsinglet
Overlap genenone
Upstream geneUgt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603
Downstream geneSmr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406A12.T7 (MSMg01no406_a12.b1)MSMg01-406A12.TJ (MSMg01no406_a12.g1)
ACCAG504322AG504323
length745753
length of high quality
(start - end)
81 (161 - 241)390 (73 - 462)
definitionCHROMAT_FILE: MSMg01no406_a12.b1 PHD_FILE: MSMg01no406_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:12 2005CHROMAT_FILE: MSMg01no406_a12.g1 PHD_FILE: MSMg01no406_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATCATTGCGGCGCTAAAGGATCACNAATACAAAACATGCGCGGAANNC
ATCCATTACATAAACAGGNGCTNGCTTCAGNGAGGCAGGTAGAATGAGTT
GGAATGACTTCTTTACCTTGTTGTTGAATGTTCATTTCTCCCCAGGAGTA
GGCATGAAACAAGCAGAATGGAAGTTACTGATCAATTATTGCTTCTCTAT
TTTAGGAGCACCTTCTCCACCTCTTGTCTATGTATGCTTTATTATATCAA
AGAAGATGTAAGGCCTCAGCACAATTAGGTGTTCTAATTAATATTTCAGT
TGTGATGATATTCTATTTACCAAGGAGCTGCCAGAAAATAATACAGAGAT
ATTTCTAAGTATCCTCCTTCCCCCTTTCCTATCTCCTCTTTGAAAATACT
TTTCTTTGACCAATAATTTTCCTGACTCTATGAATTTACAAAGGTCTTTT
GAATTTAATTACCTATCATTTCCGTAAGAGCTTCGGCGAAATATGCCTCA
CACAGGCTTTTTCTGCATTTTTAATAAATCCTTTATTCCCTCTCTCCCCA
AGTATTCTCTTCATTTATCCTTATTCCAATGGGCCCCCAGGTAAAAAATC
CTGAATTCCCTCCCTGGATCTCCTGTTTTGTCTTATCTCTTTATCCCCTG
AGAATAGTTTTCCTTCTTTTTTGTTTCCCTCTTTAACTTACCCCTTATCT
TCCTCTTTCCGTTTCTTTTTTTAAATAGACTGAGCCCATAGATAG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGACTTCTCCAATACTTTTAAATGAAG
TGGGGTTCTGTTTGGTAAAATGATTTTTCTATATTTAAGAAGTTGATATT
GAGATTTTTTTCCTTTGAGTTTGTTTATATAGTGGATTACTTTGATGGAT
TTTCATATATTGAACCAACCTTGCATCCCTGGGATGAAACCTACATTTTA
TATCTAATGTTGGTCATGAGGCATTGAACTAATAAGATAGAGAAGGCACT
TGTAACATAGATGTGTTTTTTTTTTAATATAGTCCATCAATAATATGATT
AAAAGTTATATGGCATGTAGGAAGAACAAGAGAAACAGAACTCTGAGGGG
TCATGAGGATTGAGCAGGGCATACATGCCTGATCTTTACTACTGAGATGC
AAAGAGAGAACCGGGTCACAAAAAAGGAGTCAGTATGAAAATCCTGGGGT
GCAAGATCTTTAAAGTAGGTGTGCTGTTACTTGATATTCATCAGAAGAAT
GTCTTCAATCTATATGCACTGTAGTTAAGAGGAAAGGAAAATTAGAAGGC
TCAGTTCAGGCTTTTTAAAAGTCATTATAACCTTTCTCCCTATATTATTA
CCTGTAACTATTTTATACTTTCTTGATGCTCCCCTACCCGTTTCCCTTTC
AGTATTAACCCCTGGCCCCATATTTTTTCCACTTTTCTGCACTTTCCCCC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_a12.g1 MSMg01no406_a12.g1 CHROMAT_FILE:
MSMg01no406_a12.g1 PHD_FILE: MSMg01no406_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:12 2005
         (390 letters)



>mm_chr5_88496778_88497562
          Length = 785

 Score =  656 bits (339), Expect = 0.0
 Identities = 376/395 (95%), Gaps = 14/395 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacttctccaatacttttaaatgaagtggggttctgtttggtaaaatgatttttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 200 ctgacttctccaatacttttaaatgaagtggggttctgtttggtaaaattatttttctat 259

                                                                       
Query: 61  atttaagaagttgatattgagattttttt-cctttgagtttgtttatatagtggattact 119
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 260 atttaagaagttgatattgagattttttttcctttgagtttgtttatatagtggattact 319

                                                                       
Query: 120 ttgatggattttcatatattgaaccaaccttgcatccctgggatgaaacctacattttat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgatggattttcatatattgaaccaaccttgcatccctgggatgaaacctacattttat 379

                                                                       
Query: 180 atctaatgttggtcatgaggcattgaactaataagatagagaaggcacttgtaacataga 239
           ||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||
Sbjct: 380 atctaatgttggtcatgaggcattgaactaat----tagagagggcacttgtaacataga 435

                                                                       
Query: 240 tgtgtttt----ttttttaatatagtccatcaataatatgattaaaagttatatggcatg 295
           ||||| ||    |     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgtgtcttgaaat-----aatatagtccatcaataatatgattaaaagttatatggcatg 490

                                                                       
Query: 296 taggaagaacaagagaaacagaactctgaggggtcatgaggattgagcagggcatacatg 355
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 491 taggaagaacaagagaaacagaactctgaggggccatgaggattgagcagggcatacatg 550

                                              
Query: 356 cctgatctttactactgagatgcaaagagagaacc 390
           ||||||||||||||| |||||||||||||||||||
Sbjct: 551 cctgatctttactacagagatgcaaagagagaacc 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 785
Length adjustment: 9
Effective length of query: 381
Effective length of database: 776
Effective search space:   295656
Effective search space used:   295656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)