BAC Information

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BAC

Clone NameMSMg01-406E07
Chromosome5 (Build37)
Map Location 9,738,742 - 9,738,980
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406E07.T7 (MSMg01no406_e07.b1)MSMg01-406E07.TJ (MSMg01no406_e07.g1)
ACCAG504503AG504504
length750756
length of high quality
(start - end)
239 (74 - 312)390 (71 - 460)
definitionCHROMAT_FILE: MSMg01no406_e07.b1 PHD_FILE: MSMg01no406_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:31 2005CHROMAT_FILE: MSMg01no406_e07.g1 PHD_FILE: MSMg01no406_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAATGGTACCGACTATCAAATGGGATAACAATAATCCCCTAGTGTGA
AGATCTTTAGATCATTGGACTACCATCCTGACAAGTGTGCAGTTGAAATG
GAAGAAGGGGAGCATGGATCTCAGGACACTTTGTTGAAGAAAGACCCTAT
AGACGCAAAAGTGTGTCTTTGAATTGGATTCTACCACACTGGAGTATAGG
TGGGAACCATGCTTCTGTTTTGTGCCTTTGCTAGGTAGTAACTTTTTATA
GCATGCCATATGTTTTTTTTTGNNNNNNNNNNCAANTTTAGGGTTTTGTT
TTTTTTTTTTCCTCATACATCCTAGGTAGGTGGCATTGGGCCTCAAGCTT
TTGTAAATTGGCCAGGTGGGATTTTGACTTTGATGGGTCACTGGAGCATA
TTAACAATATCCTATAAATGTGACAGTATATTCTGGTAAGGTTGCGAACA
TCCGTGCCTTAGACTATCTCTAGCTGCATATGTCACCTCATCTTCATTCC
TGGAAATAGATGCTGTTGGGTGACACAATGAGTAATATACTCTTGATGTT
CCCTGTCTCCGGCTGATCTGGCTACTTTCCGTATAGCCGCTCTTTCTTTT
TTCTTTTTTAGTTAGCAATCGTTTATGTTCGCTGTTCATTTTATTTTACC
TCTCTCCGCCTTTTTTGATTCTTTCTTCACATTTCTTTGTTTTCCCTACC

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCCTCTTTGTTGGGTATTTCAGCTAATA
TCATCCCTGTTGGGTCCTGAGAACCTCTTGTTTTCCTGGCGTCTGGGACT
TTCTGGTTAACCCCAGTTCCTCATCCCCAATTGCTGCACATCTCTGTTCA
ATTTCCTGTGGTACATCTCCCTTGTCTCCTCCCACACCTGACCCTGCCCC
CCTCCCTTTTCTCTCTCCCTCTCTCTCTACCTCCTGTGATTATTTTCTTC
CTCCTTCTAAGTATTTTTTAAGCATCCACACTTTTGTCTTCCTTCTTCTT
GAGCTTCAATTATATATATTCCATTATAGGTGGTGAGTACATGGTGAAAG
AGGAACACTCCTTCAATGCTGGTGGGATTGTAAGCTGGTACAACCACTCT
GGAAGTCAGTCTGATGGTTCCTCAGAAAATTGGACATAGTCCTACCTGAG
GACCTAGCAATACCACTCTTGAGCATATACCCAGAAGATGCTCCTATATG
TAATAAGAAAACATGCTCCACTATGCTCATAACAGCCTTATTTGTTATAT
CCAGAATCTGGAAGGAATTCTTAAGTCTCTAACACAAGAATAAATACCGA
ATATTTTGTTTATTTAACCCAACGGATATTACCTCTTTTGTTAAAAAAAA
TGGACTTTTTAAAATCTTTAGCCAAATGGTGGAACTATATTAAAATCTTT
AGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_e07.b1 MSMg01no406_e07.b1 CHROMAT_FILE:
MSMg01no406_e07.b1 PHD_FILE: MSMg01no406_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:31 2005
         (239 letters)



>mm_chr5_9738542_9739180
          Length = 639

 Score =  385 bits (199), Expect = e-111
 Identities = 229/239 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggataacaataatcccctagtgtgaagatctttagatcattggactaccatcctgaca 60
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tgggatagcaataatcccctagtgtggagatctttagatcattggactaccatcctgaca 260

                                                                       
Query: 61  agtgtgcagttgaaatggaagaaggggagcatggatctcaggacactttgttgaagaaag 120
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 261 agtgtgcagttgaaatggaagaaggggggcatggatctcaggatactttgttgaagaaag 320

                                                                       
Query: 121 accctatagacgcaaaagtgtgtctttgaattggattctaccacactggagtataggtgg 180
           |||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct: 321 accctatagatgcaaaagtgtatctttgaattggattctaccacacaggagtaaaggtgg 380

                                                                      
Query: 181 gaaccatgcttctgttttgtgcctttgctaggtagtaactttttatagcatgccatatg 239
           || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gagccatgcttctgttttgtgcctttgctaggtggtaactttttatagcatgccatatg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)