BAC Information

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BAC

Clone NameMSMg01-406F17
Chromosome5 (Build37)
Map Location 122,494,719 - 122,495,063
singlet/doubletsinglet
Overlap geneCutl2
Upstream geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, LOC100042693
Downstream geneMyl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406F17.T7 (MSMg01no406_f17.b1)MSMg01-406F17.TJ (MSMg01no406_f17.g1)
ACCAG504571AG504572
length759766
length of high quality
(start - end)
418 (45 - 462)348 (77 - 424)
definitionCHROMAT_FILE: MSMg01no406_f17.b1 PHD_FILE: MSMg01no406_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:38 2005CHROMAT_FILE: MSMg01no406_f17.g1 PHD_FILE: MSMg01no406_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTAATCTACTGTCGCTAAACGACTCACTATTCCGAGAGGATCCGC
GGAATTCTATAGTTTACCCCCGTGGTGGAAACCCAACCATCCAAAGAAAA
AACAGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCA
GAGGCAGGCAGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTGAGC
TTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAACCCGT
GGTTAATGAGGTCGGGCATACCTTTAATCCCAGCAATCAGGAGGCAGAGG
CAGGCGGGTCTCTGGGAGTTTGTTAGAGGCCAGCCTGGTCTACAGAGTGA
GTCTAGGACAGCCAGGGCTACACAGAGAAAGCTTGTCTCAGGGTTGGGGT
GGGGGAAGGGAAGGTGTATTTAAGCCTAAGTCCTCACATGTTACCTCGCC
CGCCATTTTATCCTCTCGGGGTTAGGGATACGTTCTTCTCTGGATCGATA
AAGATACATTCACGCTCGGACTCTTATTCGTAAAGCCACACACCACGCCC
ATTCCTGACTTCTGTTTTTTTTTTTTTCTTTTTTCCTCTTCCTCTTCTTC
TCCTTTCATTTTACCTTAACTCATTGCTTACATAACCAATCTTCTATTTT
CATGCTTCTCTTTTTTCCTCTCCACCCCCTTTTCCCCCCTTTTTCTCCTC
CTTATTTTN
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAATGGAGTTCAGTGTATGCT
GAGCCTCCCTGACTCTCTGGCAGTGTTTTGTAAATCGTGAGTGGTATTTT
CTTTTTATGTTGCATACACTAAACTTTGAACGCCTCCGTTTCGGCAAATA
CAATGTGACCTCCCCCACTCCATCTCTCTCCCTCACTCTTCCCCTCCAGC
ACGCAGAACCCACCCCCACCCTACCCCATGGCCTTGGCACGTGTATTTTC
CCTGCCTGGAATGTCTTCCCGACTTTCCATGGCCTCCGTGGTCCCCAGTC
TCAATAATCACCATGACTTCCCCGTTTTGTGTATGCGCCTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTNACTTTTTTTTTTTGTTGT
TTTGTTTTGCTCGTTGTTGTTTTTTGTTGTTTTTTTTTTTTGTTTTTCTT
TTGTTTTTCACTCTTTCTGTCTCNTCTTTTTTATTCTTCTATCCTTTCCC
TTTCCTTTCTTTTTTCCCCCTCCTTATCTTTTTTTTTATCTATTTCGTTC
TATAACTTTCACTTCTTTCCCTTTCTTTCACTTTTTCTTTTTTCCTTTTA
ATTATATTCCACCAATATTTCTTCTTTTTATTATTTTACCACTCATCGTT
TACTCCACGTTTATATTATATTCACCACACACATTCTTCATTTTTTTCCT
CCTCTCTACTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_f17.g1 MSMg01no406_f17.g1 CHROMAT_FILE:
MSMg01no406_f17.g1 PHD_FILE: MSMg01no406_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:38 2005
         (348 letters)



>mm_chr5_122494567_122495314
          Length = 748

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaatggagttcagtgtatgctgagcctccctgactctctggcagtgttttgtaaatc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcagaatggagttcagtgtatgcggagcctccctgactctctggcagtgttttgtaaatc 438

                                                                       
Query: 61  gtgagtggtattttctttttatgttgcatacactaaactttgaacgcctccgtttcggca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 437 gtgagtggtattttctttttatgttgcatacactaaactttgaatgcctccgtttcggca 378

                                                                       
Query: 121 aatacaatgtgacctcccccactccatctctctccctcactcttcccctccagcacgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatacaatgtgacctcccccactccatctctctccctcactcttcccctccagcacgcag 318

                                                                       
Query: 181 aacccacccccaccctaccccatggccttggcacgtgtattttccctgcctggaatgtct 240
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacctactcccaccctaccccatggccttggcacgtgtattttccctgcctggaatgtct 258

                                                                       
Query: 241 tcccgactttccatggcctccgtggtccccagtctcaataatcaccatgacttccccgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 257 tcccgactttccatggcctccgtggtccccagtctcaataatcaccatgacttccccatt 198

                                                        
Query: 301 ttgtgtatgcgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttgtgtatgcgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)