BAC Information

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BAC

Clone NameMSMg01-406H08
Chromosome5 (Build37)
Map Location 43,423,868 - 43,573,427
singlet/doubletdoublet
Overlap geneEG665934
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneCpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406H08.T7 (MSMg01no406_h08.b1)MSMg01-406H08.TJ (MSMg01no406_h08.g1)
ACCAG504649AG504650
length754755
length of high quality
(start - end)
258 (322 - 579)494 (72 - 565)
definitionCHROMAT_FILE: MSMg01no406_h08.b1 PHD_FILE: MSMg01no406_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:46 2005CHROMAT_FILE: MSMg01no406_h08.g1 PHD_FILE: MSMg01no406_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,423,868 - 43,424,125)(43,572,934 - 43,573,427)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAGAAACTGGCGGNATTC
AAGAGCATTACGTAAAGTTGCTGGCATGAGGCCTTGAGTTACATTTTATT
AAATCAAAAGTGTCCAACCTGTCGGATAAGTGGACAAACTTGACCTCTGA
TTTCAGGACTCTTCTCCATGTGAAAGGTAGCTGCTGGCTCCTAGCTTGGT
CTCTAGTCAGCACTCAATTTACATTACAATCCTTAGAAATAATGTTCTAG
GAAGGACATTCTCCTCGGGGCCCCACAACAAAGGCCATTTTTCACCTCTG
GAGGATCTAGGTTTTTGNATCAACAGAGGCACCCGGATATACTTTATTAT
ATAAAAGACATTTATTCGATTAGTTGTAGTTGTTTCATATACCAAAACAG
CATGGGTTATCAAAATAGTTCTGAACTTTTTAAAGTATAAATTATTAACT
TTCTTTACAATTGAACTTTATGCCATAAATTTACTACATTTATATTTGTA
CATATACATATTATATGTGCATATGTATTGTATGTGCTAATGTGTGTGCC
TGTCTATGTTTCAGTGGACAGGCTAACTCTGTAAAATTTTGTGCAAATTT
CACTTGCCATTTATTCTTTTTTGCTTGCCATCCTCTTCTCCTTTAATGAT
TGTTCTGTTTTCAGATCTAGATTAAAAACCATGTATACAACCTTCTCCGC
TTCTGATTGTCAAGGGAATAAATTAGTTCAGACCCCAGGTTATTCAATTC
TCTG
TGAATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTACTTCTCTGTTGCAAAGAATGAAATGA
TTCTCACTGGATTGTTGGCCAGAAGCACATCATGTAAACACTTGACAGCA
CTCTGGGCACCATTAAAATAGGACATTCCATTTTGCCTACTTTCCAAGCC
TTGGTACCGTGCAGGAAAAGTCATTCACTTCCTTCAGTGACAGGCAAACA
TTATAGAACCCTGCACTCTGGCATGGCTACAAAGAGTAAAATTCTAGGCA
TTATAGAGAGCATCTTTTTTTCATTTGTTTTAGCAAGCATTGTTTCATTT
TAATAACCTGTGACAAGATGTCTAGCTAACACGAAACACCTGGTAAACAC
ATCGGAAATATCGAAATGCGGTTACCACTCGAAAGCTCTCCCAAAACACT
TGGCTATCTACCCTTTCAGTTTACTTGTTTACTTTTAAATTTTGTACATG
CATACATTGCACATTGAGCCCATCCACCCCGCCTCCATCCTTCCTCTTAG
GCAGCTTTCTCCTCCTAGATGGTTTTACTTCTTGTTTCGTACCACGCGTA
CATGCTTGCTTTTATGTAACTACTTAAAATTTAGTAACCACAAATGAGAC
AAAACATATGTTTGCCCTTGTGAGGCTGACTTAAGTCGTTTAATATAATT
ATCTCCATTTACCTTAATGTAAGACTTGACACTCGCTACAAAGAACAAGT
TGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_h08.b1 MSMg01no406_h08.b1 CHROMAT_FILE:
MSMg01no406_h08.b1 PHD_FILE: MSMg01no406_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:46 2005
         (258 letters)



>mm_chr5_43423668_43424325
          Length = 658

 Score =  460 bits (238), Expect = e-134
 Identities = 253/258 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaggcacccggatatactttattatataaaagacatttattcgattagttgtagtt 60
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aacagaggcacccggatatactgtattatataaaagacatttattcaattagttgtagtt 260

                                                                       
Query: 61  gtttcatataccaaaacagcatgggttatcaaaatagttctgaactttttaaagtataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcatataccaaaacagcatgggttatcaaaatagttctgaactttttaaagtataaa 320

                                                                       
Query: 121 ttattaactttctttacaattgaactttatgccataaatttactacatttatatttgtac 180
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttattaactttctttacgattgaactttatgccataaatttactacatatatatttgtac 380

                                                                       
Query: 181 atatacatattatatgtgcatatgtattgtatgtgctaatgtgtgtgcctgtctatgttt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatacatattgtatgtgcatatgtattgtatgtgctaatgtgtgtgcctgtctatgttt 440

                             
Query: 241 cagtggacaggctaactc 258
           ||||||||||||||||||
Sbjct: 441 cagtggacaggctaactc 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no406_h08.g1 MSMg01no406_h08.g1 CHROMAT_FILE:
MSMg01no406_h08.g1 PHD_FILE: MSMg01no406_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:46 2005
         (494 letters)



>mm_chr5_43572734_43573627
          Length = 894

 Score =  940 bits (486), Expect = 0.0
 Identities = 492/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacttctctgttgcaaagaatgaaatgattctcactggattgttggccagaagcacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttacttctctgttgcaaagaatgaaatgattctcactggattgttggccagaagcacatc 635

                                                                       
Query: 61  atgtaaacacttgacagcactctgggcaccattaaaataggacattccattttgcctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atgtaaacacttgacagcactctgggcaccattaaaataggacattccattttgcctact 575

                                                                       
Query: 121 ttccaagccttggtaccgtgcaggaaaagtcattcacttccttcagtgacaggcaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttccaagccttggtaccgtgcaggaaaagtcattcacttccttcagtgacaggcaaacat 515

                                                                       
Query: 181 tatagaaccctgcactctggcatggctacaaagagtaaaattctaggcattatagagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tatagaaccctgcactctggcatggctacaaagagtaaaattctaggcattatagagagc 455

                                                                       
Query: 241 atctttttttcatttgttttagcaagcattgtttcattttaataacctgtgacaagatgt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atcttttttccatttgttttagcaagcattgtttcattttaataacctgtgacaagatgt 395

                                                                       
Query: 301 ctagctaacacgaaacacctggtaaacacatcggaaatatcgaaatgcggttaccactcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctagctaacacgaaacacctggtaaacacatcggaaatatcgaaatgcggttaccactcg 335

                                                                       
Query: 361 aaagctctcccaaaacacttggctatctaccctttcagtttacttgtttacttttaaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaagctctcccaaaacacttggctatctaccctttcagtttacttgtttacttttaaatt 275

                                                                       
Query: 421 ttgtacatgcatacattgcacattgagcccatccaccccgcctccatccttcctcttagg 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 274 ttgtacatgcatacattgcacattgagcccatccaccccgcccccatccttcctcttagg 215

                         
Query: 481 cagctttctcctcc 494
           ||||||||||||||
Sbjct: 214 cagctttctcctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)